Strain Fitness in Shewanella loihica PV-4 around Shew_0455

Experiment: Phosphomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0454 and Shew_0455 are separated by 165 nucleotidesShew_0455 and Shew_0456 are separated by 47 nucleotides Shew_0454: Shew_0454 - enoyl-CoA hydratase (RefSeq), at 504,816 to 505,625 _0454 Shew_0455: Shew_0455 - hypothetical protein (RefSeq), at 505,791 to 506,294 _0455 Shew_0456: Shew_0456 - hypothetical protein (RefSeq), at 506,342 to 507,226 _0456 Position (kb) 505 506 507Strain fitness (log2 ratio) -1 0 1at 504.839 kb on + strandat 504.842 kb on - strandat 504.862 kb on + strandat 504.911 kb on + strand, within Shew_0454at 505.019 kb on - strand, within Shew_0454at 505.324 kb on + strand, within Shew_0454at 506.038 kb on + strand, within Shew_0455at 506.209 kb on - strand, within Shew_0455at 506.383 kb on - strandat 506.406 kb on + strandat 506.542 kb on - strand, within Shew_0456at 506.561 kb on - strand, within Shew_0456at 506.617 kb on - strand, within Shew_0456at 506.621 kb on + strand, within Shew_0456at 506.634 kb on - strand, within Shew_0456at 506.746 kb on + strand, within Shew_0456at 506.861 kb on + strand, within Shew_0456at 506.919 kb on - strand, within Shew_0456at 506.933 kb on + strand, within Shew_0456at 507.040 kb on + strand, within Shew_0456at 507.079 kb on + strand, within Shew_0456at 507.137 kb on - strand, within Shew_0456at 507.142 kb on - strandat 507.192 kb on + strandat 507.277 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml
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504,839 + -0.3
504,842 - -0.2
504,862 + +0.8
504,911 + Shew_0454 0.12 -0.6
505,019 - Shew_0454 0.25 +0.3
505,324 + Shew_0454 0.63 +0.7
506,038 + Shew_0455 0.49 -0.2
506,209 - Shew_0455 0.83 +0.6
506,383 - +1.2
506,406 + +0.7
506,542 - Shew_0456 0.23 +0.2
506,561 - Shew_0456 0.25 +0.2
506,617 - Shew_0456 0.31 +1.1
506,621 + Shew_0456 0.32 -0.8
506,634 - Shew_0456 0.33 +1.1
506,746 + Shew_0456 0.46 -0.8
506,861 + Shew_0456 0.59 -0.1
506,919 - Shew_0456 0.65 +0.5
506,933 + Shew_0456 0.67 -0.0
507,040 + Shew_0456 0.79 -0.3
507,079 + Shew_0456 0.83 -0.3
507,137 - Shew_0456 0.90 -0.1
507,142 - +0.2
507,192 + +0.6
507,277 - +0.3

Or see this region's nucleotide sequence