Strain Fitness in Shewanella loihica PV-4 around Shew_0402

Experiment: Phosphomycin 0.24 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0400 and Shew_0401 overlap by 11 nucleotidesShew_0401 and Shew_0402 overlap by 8 nucleotidesShew_0402 and Shew_0403 are separated by 165 nucleotides Shew_0400: Shew_0400 - methylation site containing protein (RefSeq), at 448,909 to 449,706 _0400 Shew_0401: Shew_0401 - MSHA biogenesis protein MshP (RefSeq), at 449,696 to 450,133 _0401 Shew_0402: Shew_0402 - MSHA biogenesis protein MshQ (RefSeq), at 450,126 to 452,828 _0402 Shew_0403: Shew_0403 - cell shape determining protein MreB (RefSeq), at 452,994 to 454,043 _0403 Position (kb) 450 451 452 453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 449.252 kb on + strand, within Shew_0400at 449.313 kb on - strand, within Shew_0400at 449.363 kb on - strand, within Shew_0400at 449.418 kb on - strand, within Shew_0400at 449.418 kb on - strand, within Shew_0400at 449.642 kb on + strandat 449.989 kb on - strand, within Shew_0401at 450.014 kb on + strand, within Shew_0401at 450.170 kb on + strandat 450.321 kb on - strandat 451.130 kb on + strand, within Shew_0402at 451.583 kb on + strand, within Shew_0402at 451.583 kb on + strand, within Shew_0402at 451.591 kb on - strand, within Shew_0402at 451.643 kb on + strand, within Shew_0402at 451.784 kb on - strand, within Shew_0402at 451.814 kb on + strand, within Shew_0402at 451.814 kb on + strand, within Shew_0402at 451.852 kb on + strand, within Shew_0402at 451.884 kb on + strand, within Shew_0402at 451.884 kb on + strand, within Shew_0402at 451.884 kb on + strand, within Shew_0402at 451.884 kb on + strand, within Shew_0402at 451.884 kb on + strand, within Shew_0402at 452.080 kb on + strand, within Shew_0402at 452.088 kb on - strand, within Shew_0402at 452.536 kb on + strand, within Shew_0402at 452.549 kb on - strand, within Shew_0402at 452.680 kb on + strandat 452.747 kb on - strandat 452.859 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml
remove
449,252 + Shew_0400 0.43 +1.6
449,313 - Shew_0400 0.51 -1.9
449,363 - Shew_0400 0.57 +1.1
449,418 - Shew_0400 0.64 +0.8
449,418 - Shew_0400 0.64 +1.4
449,642 + +1.7
449,989 - Shew_0401 0.67 -1.2
450,014 + Shew_0401 0.73 +0.0
450,170 + +1.4
450,321 - +0.1
451,130 + Shew_0402 0.37 +1.4
451,583 + Shew_0402 0.54 +1.3
451,583 + Shew_0402 0.54 +1.2
451,591 - Shew_0402 0.54 +1.8
451,643 + Shew_0402 0.56 +0.8
451,784 - Shew_0402 0.61 +2.5
451,814 + Shew_0402 0.62 +2.9
451,814 + Shew_0402 0.62 +1.4
451,852 + Shew_0402 0.64 +1.2
451,884 + Shew_0402 0.65 -4.1
451,884 + Shew_0402 0.65 +3.0
451,884 + Shew_0402 0.65 +0.8
451,884 + Shew_0402 0.65 +2.0
451,884 + Shew_0402 0.65 +0.2
452,080 + Shew_0402 0.72 +1.5
452,088 - Shew_0402 0.73 +0.5
452,536 + Shew_0402 0.89 +1.4
452,549 - Shew_0402 0.90 +0.7
452,680 + +1.0
452,747 - +1.4
452,859 - -0.3

Or see this region's nucleotide sequence