Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0391 and Shew_0392 overlap by 4 nucleotides Shew_0392 and Shew_0393 are separated by 2 nucleotides
Shew_0391: Shew_0391 - TPR repeat-containing protein (RefSeq), at 441,297 to 442,457
_0391
Shew_0392: Shew_0392 - type II secretion system protein E (RefSeq), at 442,454 to 444,214
_0392
Shew_0393: Shew_0393 - type II secretion system protein (RefSeq), at 444,217 to 445,434
_0393
Position (kb) 442
443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 441.463 kb on - strand, within Shew_0391 at 441.751 kb on - strand, within Shew_0391 at 441.763 kb on - strand, within Shew_0391 at 441.768 kb on + strand, within Shew_0391 at 441.773 kb on + strand, within Shew_0391 at 441.832 kb on - strand, within Shew_0391 at 441.941 kb on + strand, within Shew_0391 at 442.038 kb on - strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.385 kb on - strand at 442.703 kb on + strand, within Shew_0392 at 442.834 kb on - strand, within Shew_0392 at 442.880 kb on + strand, within Shew_0392 at 443.010 kb on - strand, within Shew_0392 at 443.258 kb on - strand, within Shew_0392 at 443.349 kb on - strand, within Shew_0392 at 443.473 kb on + strand, within Shew_0392 at 443.727 kb on + strand, within Shew_0392 at 444.058 kb on - strand at 444.099 kb on + strand at 444.348 kb on + strand, within Shew_0393 at 444.466 kb on - strand, within Shew_0393 at 444.486 kb on + strand, within Shew_0393 at 444.731 kb on - strand, within Shew_0393 at 444.731 kb on - strand, within Shew_0393 at 444.755 kb on - strand, within Shew_0393 at 444.834 kb on - strand, within Shew_0393 at 445.058 kb on + strand, within Shew_0393 at 445.066 kb on - strand, within Shew_0393 at 445.165 kb on - strand, within Shew_0393
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml remove 441,463 - Shew_0391 0.14 +1.6 441,751 - Shew_0391 0.39 +1.7 441,763 - Shew_0391 0.40 +1.1 441,768 + Shew_0391 0.41 +0.9 441,773 + Shew_0391 0.41 +1.0 441,832 - Shew_0391 0.46 +1.2 441,941 + Shew_0391 0.55 +0.4 442,038 - Shew_0391 0.64 -0.4 442,049 + Shew_0391 0.65 -0.8 442,049 + Shew_0391 0.65 +1.3 442,057 - Shew_0391 0.65 +0.9 442,057 - Shew_0391 0.65 -3.2 442,057 - Shew_0391 0.65 +0.8 442,057 - Shew_0391 0.65 +1.0 442,057 - Shew_0391 0.65 +0.4 442,057 - Shew_0391 0.65 +1.1 442,057 - Shew_0391 0.65 +1.2 442,057 - Shew_0391 0.65 +1.3 442,385 - +1.8 442,703 + Shew_0392 0.14 +1.2 442,834 - Shew_0392 0.22 +1.6 442,880 + Shew_0392 0.24 +1.2 443,010 - Shew_0392 0.32 +0.9 443,258 - Shew_0392 0.46 +2.1 443,349 - Shew_0392 0.51 +1.6 443,473 + Shew_0392 0.58 +1.9 443,727 + Shew_0392 0.72 +1.5 444,058 - +1.6 444,099 + +1.3 444,348 + Shew_0393 0.11 +0.7 444,466 - Shew_0393 0.20 +0.7 444,486 + Shew_0393 0.22 +1.5 444,731 - Shew_0393 0.42 +0.5 444,731 - Shew_0393 0.42 +1.2 444,755 - Shew_0393 0.44 +1.3 444,834 - Shew_0393 0.51 -1.3 445,058 + Shew_0393 0.69 +0.7 445,066 - Shew_0393 0.70 +1.4 445,165 - Shew_0393 0.78 +1.7
Or see this region's nucleotide sequence