Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3725

Experiment: Succinic Acid; Light intensity 18 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3724 and Rru_A3725 overlap by 8 nucleotidesRru_A3725 and Rru_A3726 overlap by 4 nucleotidesRru_A3726 and Rru_A3727 overlap by 4 nucleotides Rru_A3724: Rru_A3724 - ABC transporter component (NCBI), at 4,276,384 to 4,277,166 _A3724 Rru_A3725: Rru_A3725 - ABC transporter component (NCBI), at 4,277,159 to 4,277,899 _A3725 Rru_A3726: Rru_A3726 - inner-membrane translocator (NCBI), at 4,277,896 to 4,278,798 _A3726 Rru_A3727: Rru_A3727 - inner-membrane translocator (NCBI), at 4,278,795 to 4,279,799 _A3727 Position (kb) 4277 4278Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4276.216 kb on - strandat 4276.216 kb on - strandat 4276.252 kb on - strandat 4276.434 kb on + strandat 4276.434 kb on + strandat 4276.435 kb on - strandat 4276.435 kb on - strandat 4276.435 kb on - strandat 4276.435 kb on - strandat 4276.951 kb on - strand, within Rru_A3724at 4276.951 kb on - strand, within Rru_A3724at 4277.005 kb on + strand, within Rru_A3724at 4277.005 kb on + strand, within Rru_A3724at 4277.006 kb on - strand, within Rru_A3724at 4277.006 kb on - strand, within Rru_A3724at 4277.006 kb on - strand, within Rru_A3724at 4277.150 kb on - strandat 4277.150 kb on - strandat 4277.220 kb on - strandat 4277.306 kb on - strand, within Rru_A3725at 4277.306 kb on - strand, within Rru_A3725at 4277.360 kb on - strand, within Rru_A3725at 4277.801 kb on + strand, within Rru_A3725at 4277.801 kb on + strand, within Rru_A3725at 4277.802 kb on - strand, within Rru_A3725at 4277.802 kb on - strand, within Rru_A3725at 4277.879 kb on + strandat 4277.880 kb on - strandat 4277.880 kb on - strandat 4277.957 kb on - strandat 4277.957 kb on - strandat 4278.046 kb on + strand, within Rru_A3726at 4278.047 kb on - strand, within Rru_A3726at 4278.211 kb on + strand, within Rru_A3726at 4278.211 kb on + strand, within Rru_A3726at 4278.211 kb on + strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.292 kb on + strand, within Rru_A3726at 4278.292 kb on + strand, within Rru_A3726at 4278.293 kb on - strand, within Rru_A3726at 4278.293 kb on - strand, within Rru_A3726at 4278.294 kb on + strand, within Rru_A3726at 4278.295 kb on - strand, within Rru_A3726at 4278.432 kb on + strand, within Rru_A3726at 4278.647 kb on - strand, within Rru_A3726

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
remove
4,276,216 - +1.5
4,276,216 - +0.1
4,276,252 - +1.1
4,276,434 + -1.5
4,276,434 + +1.1
4,276,435 - +2.0
4,276,435 - +0.1
4,276,435 - +0.1
4,276,435 - +2.2
4,276,951 - Rru_A3724 0.72 +0.6
4,276,951 - Rru_A3724 0.72 +0.1
4,277,005 + Rru_A3724 0.79 -0.7
4,277,005 + Rru_A3724 0.79 +1.0
4,277,006 - Rru_A3724 0.79 +1.7
4,277,006 - Rru_A3724 0.79 +2.3
4,277,006 - Rru_A3724 0.79 +2.1
4,277,150 - +0.1
4,277,150 - +0.1
4,277,220 - +0.1
4,277,306 - Rru_A3725 0.20 -0.9
4,277,306 - Rru_A3725 0.20 +2.0
4,277,360 - Rru_A3725 0.27 -0.0
4,277,801 + Rru_A3725 0.87 +3.5
4,277,801 + Rru_A3725 0.87 +2.4
4,277,802 - Rru_A3725 0.87 +0.1
4,277,802 - Rru_A3725 0.87 +0.1
4,277,879 + +0.1
4,277,880 - +0.1
4,277,880 - +0.6
4,277,957 - +0.1
4,277,957 - -1.5
4,278,046 + Rru_A3726 0.17 +0.1
4,278,047 - Rru_A3726 0.17 +2.5
4,278,211 + Rru_A3726 0.35 +2.5
4,278,211 + Rru_A3726 0.35 +1.6
4,278,211 + Rru_A3726 0.35 +1.9
4,278,212 - Rru_A3726 0.35 +0.1
4,278,212 - Rru_A3726 0.35 +0.1
4,278,212 - Rru_A3726 0.35 +0.7
4,278,212 - Rru_A3726 0.35 +2.8
4,278,212 - Rru_A3726 0.35 +0.7
4,278,212 - Rru_A3726 0.35 +1.1
4,278,212 - Rru_A3726 0.35 +0.1
4,278,212 - Rru_A3726 0.35 +0.1
4,278,212 - Rru_A3726 0.35 +0.1
4,278,212 - Rru_A3726 0.35 +0.1
4,278,292 + Rru_A3726 0.44 +0.1
4,278,292 + Rru_A3726 0.44 -2.5
4,278,293 - Rru_A3726 0.44 +2.5
4,278,293 - Rru_A3726 0.44 +2.4
4,278,294 + Rru_A3726 0.44 +1.7
4,278,295 - Rru_A3726 0.44 +1.4
4,278,432 + Rru_A3726 0.59 +0.1
4,278,647 - Rru_A3726 0.83 -2.7

Or see this region's nucleotide sequence