Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3658

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3657 and Rru_A3658 are separated by 61 nucleotidesRru_A3658 and Rru_A3659 overlap by 4 nucleotides Rru_A3657: Rru_A3657 - Glycosyl transferase, family 4 (NCBI), at 4,198,021 to 4,199,034 _A3657 Rru_A3658: Rru_A3658 - Glycosyl transferase, group 1 (NCBI), at 4,199,096 to 4,200,256 _A3658 Rru_A3659: Rru_A3659 - hypothetical protein (NCBI), at 4,200,253 to 4,201,857 _A3659 Position (kb) 4199 4200 4201Strain fitness (log2 ratio) -1 0 1 2at 4199.065 kb on + strandat 4199.066 kb on - strandat 4199.067 kb on + strandat 4199.068 kb on - strandat 4199.068 kb on - strandat 4199.068 kb on - strandat 4199.863 kb on - strand, within Rru_A3658at 4200.562 kb on - strand, within Rru_A3659at 4200.635 kb on + strand, within Rru_A3659at 4200.635 kb on + strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4201.112 kb on + strand, within Rru_A3659

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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4,199,065 + -0.9
4,199,066 - +2.1
4,199,067 + +0.1
4,199,068 - +0.1
4,199,068 - +0.1
4,199,068 - +0.1
4,199,863 - Rru_A3658 0.66 +0.1
4,200,562 - Rru_A3659 0.19 +0.1
4,200,635 + Rru_A3659 0.24 -0.9
4,200,635 + Rru_A3659 0.24 +1.0
4,200,891 - Rru_A3659 0.40 +0.1
4,200,891 - Rru_A3659 0.40 -0.9
4,200,891 - Rru_A3659 0.40 +2.6
4,200,891 - Rru_A3659 0.40 +0.1
4,200,891 - Rru_A3659 0.40 +0.1
4,201,112 + Rru_A3659 0.54 +0.1

Or see this region's nucleotide sequence