Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3644 and Rru_A3645 overlap by 4 nucleotides Rru_A3645 and Rru_A3646 are separated by 85 nucleotides Rru_A3646 and Rru_A3647 are separated by 13 nucleotides Rru_A3647 and Rru_A3648 are separated by 101 nucleotides
Rru_A3644: Rru_A3644 - Uracil-DNA glycosylase superfamily (NCBI), at 4,184,903 to 4,185,502
_A3644
Rru_A3645: Rru_A3645 - Silent information regulator protein Sir2 (NCBI), at 4,185,499 to 4,186,230
_A3645
Rru_A3646: Rru_A3646 - Protein tyrosine phosphatase (NCBI), at 4,186,316 to 4,186,807
_A3646
Rru_A3647: Rru_A3647 - hypothetical protein (NCBI), at 4,186,821 to 4,187,435
_A3647
Rru_A3648: Rru_A3648 - Aminoglycoside phosphotransferase (NCBI), at 4,187,537 to 4,188,391
_A3648
Position (kb) 4186
4187 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4185.536 kb on + strand at 4185.537 kb on - strand at 4185.537 kb on - strand at 4185.566 kb on + strand at 4185.566 kb on + strand at 4185.567 kb on - strand at 4185.624 kb on + strand, within Rru_A3645 at 4185.775 kb on - strand, within Rru_A3645 at 4185.775 kb on - strand, within Rru_A3645 at 4185.775 kb on - strand, within Rru_A3645 at 4185.904 kb on - strand, within Rru_A3645 at 4185.904 kb on - strand, within Rru_A3645 at 4185.904 kb on - strand, within Rru_A3645 at 4186.056 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.059 kb on - strand, within Rru_A3645 at 4186.059 kb on - strand, within Rru_A3645 at 4186.059 kb on - strand, within Rru_A3645 at 4186.059 kb on - strand, within Rru_A3645 at 4186.234 kb on + strand at 4186.234 kb on + strand at 4186.234 kb on + strand at 4186.235 kb on - strand at 4186.235 kb on - strand at 4186.275 kb on - strand at 4186.348 kb on + strand at 4186.348 kb on + strand at 4186.611 kb on + strand, within Rru_A3646 at 4186.611 kb on + strand, within Rru_A3646 at 4186.611 kb on + strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.697 kb on + strand, within Rru_A3646 at 4186.698 kb on - strand, within Rru_A3646 at 4186.698 kb on - strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.701 kb on - strand, within Rru_A3646 at 4187.442 kb on - strand at 4187.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 4,185,536 + +0.1 4,185,537 - +0.1 4,185,537 - +1.9 4,185,566 + +0.1 4,185,566 + -0.2 4,185,567 - +0.1 4,185,624 + Rru_A3645 0.17 +0.1 4,185,775 - Rru_A3645 0.38 +1.7 4,185,775 - Rru_A3645 0.38 +2.1 4,185,775 - Rru_A3645 0.38 +0.1 4,185,904 - Rru_A3645 0.55 +2.0 4,185,904 - Rru_A3645 0.55 +0.1 4,185,904 - Rru_A3645 0.55 -1.9 4,186,056 + Rru_A3645 0.76 +2.9 4,186,058 + Rru_A3645 0.76 +2.7 4,186,058 + Rru_A3645 0.76 +0.1 4,186,058 + Rru_A3645 0.76 +0.1 4,186,058 + Rru_A3645 0.76 +0.1 4,186,058 + Rru_A3645 0.76 +0.7 4,186,058 + Rru_A3645 0.76 +0.1 4,186,059 - Rru_A3645 0.77 -3.3 4,186,059 - Rru_A3645 0.77 +0.1 4,186,059 - Rru_A3645 0.77 +0.9 4,186,059 - Rru_A3645 0.77 +0.1 4,186,234 + +0.1 4,186,234 + +0.1 4,186,234 + +3.9 4,186,235 - +0.7 4,186,235 - +1.2 4,186,275 - +1.3 4,186,348 + +0.1 4,186,348 + -1.0 4,186,611 + Rru_A3646 0.60 +0.1 4,186,611 + Rru_A3646 0.60 +1.7 4,186,611 + Rru_A3646 0.60 +2.2 4,186,612 - Rru_A3646 0.60 +0.1 4,186,612 - Rru_A3646 0.60 -0.3 4,186,612 - Rru_A3646 0.60 +0.1 4,186,612 - Rru_A3646 0.60 -2.5 4,186,697 + Rru_A3646 0.77 +1.5 4,186,698 - Rru_A3646 0.78 -2.5 4,186,698 - Rru_A3646 0.78 -5.1 4,186,700 + Rru_A3646 0.78 +0.1 4,186,700 + Rru_A3646 0.78 +0.9 4,186,700 + Rru_A3646 0.78 +1.4 4,186,700 + Rru_A3646 0.78 +1.5 4,186,701 - Rru_A3646 0.78 +0.1 4,187,442 - +0.1 4,187,478 - +2.1
Or see this region's nucleotide sequence