Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3149 and Rru_A3150 overlap by 4 nucleotides Rru_A3150 and Rru_A3151 are separated by 3 nucleotides
Rru_A3149: Rru_A3149 - Protein of unknown function DUF214 (NCBI), at 3,633,942 to 3,635,174
_A3149
Rru_A3150: Rru_A3150 - ABC transporter component (NCBI), at 3,635,171 to 3,635,893
_A3150
Rru_A3151: Rru_A3151 - serine/threonine protein kinase (NCBI), at 3,635,897 to 3,637,894
_A3151
Position (kb)
3635
3636 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3634.305 kb on + strand, within Rru_A3149 at 3635.610 kb on + strand, within Rru_A3150 at 3635.610 kb on + strand, within Rru_A3150 at 3635.611 kb on - strand, within Rru_A3150 at 3635.611 kb on - strand, within Rru_A3150 at 3635.677 kb on + strand, within Rru_A3150 at 3635.678 kb on - strand, within Rru_A3150 at 3635.762 kb on - strand, within Rru_A3150 at 3635.899 kb on - strand at 3635.899 kb on - strand at 3635.978 kb on - strand at 3635.988 kb on + strand at 3635.989 kb on - strand at 3635.997 kb on + strand at 3635.998 kb on - strand at 3636.015 kb on + strand at 3636.016 kb on - strand at 3636.100 kb on - strand, within Rru_A3151 at 3636.518 kb on + strand, within Rru_A3151 at 3636.519 kb on - strand, within Rru_A3151 at 3636.616 kb on - strand, within Rru_A3151 at 3636.616 kb on - strand, within Rru_A3151 at 3636.618 kb on + strand, within Rru_A3151 at 3636.619 kb on - strand, within Rru_A3151 at 3636.619 kb on - strand, within Rru_A3151 at 3636.619 kb on - strand, within Rru_A3151 at 3636.619 kb on - strand, within Rru_A3151 at 3636.657 kb on + strand, within Rru_A3151 at 3636.718 kb on - strand, within Rru_A3151 at 3636.856 kb on - strand, within Rru_A3151
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 3,634,305 + Rru_A3149 0.29 -0.7 3,635,610 + Rru_A3150 0.61 +0.0 3,635,610 + Rru_A3150 0.61 +0.0 3,635,611 - Rru_A3150 0.61 -1.2 3,635,611 - Rru_A3150 0.61 +0.0 3,635,677 + Rru_A3150 0.70 +0.0 3,635,678 - Rru_A3150 0.70 +0.0 3,635,762 - Rru_A3150 0.82 +0.0 3,635,899 - +2.2 3,635,899 - +2.3 3,635,978 - +0.0 3,635,988 + -1.0 3,635,989 - +0.0 3,635,997 + +0.0 3,635,998 - -1.6 3,636,015 + +1.3 3,636,016 - +0.0 3,636,100 - Rru_A3151 0.10 +0.0 3,636,518 + Rru_A3151 0.31 +0.0 3,636,519 - Rru_A3151 0.31 +0.0 3,636,616 - Rru_A3151 0.36 +0.0 3,636,616 - Rru_A3151 0.36 +1.9 3,636,618 + Rru_A3151 0.36 +3.7 3,636,619 - Rru_A3151 0.36 +0.0 3,636,619 - Rru_A3151 0.36 +1.8 3,636,619 - Rru_A3151 0.36 +0.0 3,636,619 - Rru_A3151 0.36 +0.0 3,636,657 + Rru_A3151 0.38 +0.0 3,636,718 - Rru_A3151 0.41 +0.0 3,636,856 - Rru_A3151 0.48 +0.0
Or see this region's nucleotide sequence