Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2770

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2768 and Rru_A2769 are separated by 146 nucleotidesRru_A2769 and Rru_A2770 are separated by 5 nucleotidesRru_A2770 and Rru_A2771 are separated by 2 nucleotides Rru_A2768: Rru_A2768 - Maf-like protein (NCBI), at 3,202,992 to 3,203,624 _A2768 Rru_A2769: Rru_A2769 - Protein tyrosine phosphatase (NCBI), at 3,203,771 to 3,204,220 _A2769 Rru_A2770: Rru_A2770 - Uncharacterized conserved protein UCP032146 (NCBI), at 3,204,226 to 3,204,711 _A2770 Rru_A2771: Rru_A2771 - Histidinol dehydrogenase (NCBI), at 3,204,714 to 3,206,018 _A2771 Position (kb) 3204 3205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3203.676 kb on + strandat 3203.694 kb on + strandat 3203.712 kb on + strandat 3203.712 kb on + strandat 3203.712 kb on + strandat 3203.713 kb on - strandat 3204.277 kb on - strand, within Rru_A2770at 3204.408 kb on - strand, within Rru_A2770at 3204.428 kb on + strand, within Rru_A2770at 3204.670 kb on - strandat 3204.670 kb on - strandat 3204.716 kb on - strandat 3204.953 kb on + strand, within Rru_A2771at 3205.326 kb on - strand, within Rru_A2771at 3205.326 kb on - strand, within Rru_A2771at 3205.373 kb on - strand, within Rru_A2771at 3205.373 kb on - strand, within Rru_A2771at 3205.426 kb on + strand, within Rru_A2771at 3205.427 kb on - strand, within Rru_A2771at 3205.606 kb on + strand, within Rru_A2771at 3205.631 kb on - strand, within Rru_A2771at 3205.631 kb on - strand, within Rru_A2771at 3205.631 kb on - strand, within Rru_A2771

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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3,203,676 + -0.0
3,203,694 + -0.0
3,203,712 + -0.0
3,203,712 + -1.6
3,203,712 + -1.0
3,203,713 - -0.0
3,204,277 - Rru_A2770 0.10 -0.0
3,204,408 - Rru_A2770 0.37 -0.0
3,204,428 + Rru_A2770 0.42 -0.0
3,204,670 - +1.5
3,204,670 - +2.0
3,204,716 - +0.1
3,204,953 + Rru_A2771 0.18 -2.2
3,205,326 - Rru_A2771 0.47 -0.0
3,205,326 - Rru_A2771 0.47 +1.0
3,205,373 - Rru_A2771 0.50 -2.4
3,205,373 - Rru_A2771 0.50 -0.0
3,205,426 + Rru_A2771 0.55 -0.0
3,205,427 - Rru_A2771 0.55 -0.0
3,205,606 + Rru_A2771 0.68 -3.0
3,205,631 - Rru_A2771 0.70 -0.0
3,205,631 - Rru_A2771 0.70 -1.0
3,205,631 - Rru_A2771 0.70 -0.0

Or see this region's nucleotide sequence