Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2617

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2616 and Rru_A2617 are separated by 52 nucleotidesRru_A2617 and Rru_A2618 are separated by 32 nucleotides Rru_A2616: Rru_A2616 - Histone deacetylase superfamily (NCBI), at 3,044,654 to 3,045,583 _A2616 Rru_A2617: Rru_A2617 - Exonuclease VII, small subunit (NCBI), at 3,045,636 to 3,046,004 _A2617 Rru_A2618: Rru_A2618 - Polyprenyl synthetase (NCBI), at 3,046,037 to 3,046,954 _A2618 Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.882 kb on + strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3044.883 kb on - strand, within Rru_A2616at 3045.086 kb on + strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.087 kb on - strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.166 kb on + strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.167 kb on - strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.194 kb on + strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.195 kb on - strand, within Rru_A2616at 3045.672 kb on + strandat 3045.880 kb on - strand, within Rru_A2617at 3046.169 kb on + strand, within Rru_A2618

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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3,044,882 + Rru_A2616 0.25 +1.8
3,044,882 + Rru_A2616 0.25 +2.3
3,044,882 + Rru_A2616 0.25 +1.4
3,044,882 + Rru_A2616 0.25 +1.8
3,044,882 + Rru_A2616 0.25 +0.1
3,044,882 + Rru_A2616 0.25 +2.2
3,044,882 + Rru_A2616 0.25 +1.6
3,044,883 - Rru_A2616 0.25 +3.4
3,044,883 - Rru_A2616 0.25 +1.7
3,044,883 - Rru_A2616 0.25 -0.0
3,044,883 - Rru_A2616 0.25 -0.0
3,044,883 - Rru_A2616 0.25 -0.0
3,044,883 - Rru_A2616 0.25 +3.2
3,044,883 - Rru_A2616 0.25 +2.6
3,044,883 - Rru_A2616 0.25 +3.6
3,044,883 - Rru_A2616 0.25 +2.5
3,044,883 - Rru_A2616 0.25 -0.0
3,044,883 - Rru_A2616 0.25 +1.1
3,044,883 - Rru_A2616 0.25 +2.8
3,044,883 - Rru_A2616 0.25 -0.0
3,045,086 + Rru_A2616 0.46 -0.0
3,045,087 - Rru_A2616 0.47 +0.9
3,045,087 - Rru_A2616 0.47 +2.9
3,045,087 - Rru_A2616 0.47 -1.0
3,045,087 - Rru_A2616 0.47 -0.0
3,045,087 - Rru_A2616 0.47 -0.0
3,045,087 - Rru_A2616 0.47 -0.0
3,045,166 + Rru_A2616 0.55 -2.3
3,045,166 + Rru_A2616 0.55 -2.6
3,045,166 + Rru_A2616 0.55 +1.7
3,045,166 + Rru_A2616 0.55 +2.5
3,045,166 + Rru_A2616 0.55 -0.0
3,045,166 + Rru_A2616 0.55 -0.0
3,045,167 - Rru_A2616 0.55 -0.0
3,045,167 - Rru_A2616 0.55 +3.1
3,045,167 - Rru_A2616 0.55 -0.0
3,045,167 - Rru_A2616 0.55 -1.0
3,045,167 - Rru_A2616 0.55 +2.8
3,045,167 - Rru_A2616 0.55 +2.7
3,045,167 - Rru_A2616 0.55 +2.6
3,045,194 + Rru_A2616 0.58 +1.2
3,045,194 + Rru_A2616 0.58 +1.1
3,045,194 + Rru_A2616 0.58 +2.2
3,045,194 + Rru_A2616 0.58 +1.6
3,045,194 + Rru_A2616 0.58 -0.0
3,045,194 + Rru_A2616 0.58 -0.0
3,045,194 + Rru_A2616 0.58 +0.3
3,045,194 + Rru_A2616 0.58 +3.3
3,045,194 + Rru_A2616 0.58 +2.2
3,045,194 + Rru_A2616 0.58 +2.3
3,045,194 + Rru_A2616 0.58 +2.6
3,045,194 + Rru_A2616 0.58 -0.0
3,045,194 + Rru_A2616 0.58 +0.6
3,045,195 - Rru_A2616 0.58 +2.7
3,045,195 - Rru_A2616 0.58 -0.0
3,045,195 - Rru_A2616 0.58 -0.0
3,045,195 - Rru_A2616 0.58 +3.1
3,045,195 - Rru_A2616 0.58 +3.8
3,045,195 - Rru_A2616 0.58 +1.5
3,045,195 - Rru_A2616 0.58 +2.4
3,045,195 - Rru_A2616 0.58 -0.0
3,045,195 - Rru_A2616 0.58 -0.0
3,045,195 - Rru_A2616 0.58 +1.8
3,045,672 + +2.0
3,045,880 - Rru_A2617 0.66 -0.0
3,046,169 + Rru_A2618 0.14 -0.0

Or see this region's nucleotide sequence