Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2072

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2071 and Rru_A2072 are separated by 77 nucleotidesRru_A2072 and Rru_A2073 are separated by 123 nucleotides Rru_A2071: Rru_A2071 - Methylmalonate-semialdehyde dehydrogenase (NCBI), at 2,395,812 to 2,397,317 _A2071 Rru_A2072: Rru_A2072 - Aspartyl-tRNA synthetase (NCBI), at 2,397,395 to 2,399,215 _A2072 Rru_A2073: Rru_A2073 - Ribonuclease D (NCBI), at 2,399,339 to 2,400,499 _A2073 Position (kb) 2397 2398 2399 2400Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2396.514 kb on + strand, within Rru_A2071at 2396.514 kb on + strand, within Rru_A2071at 2396.514 kb on + strand, within Rru_A2071at 2396.514 kb on + strand, within Rru_A2071at 2396.514 kb on + strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.515 kb on - strand, within Rru_A2071at 2396.520 kb on + strand, within Rru_A2071at 2396.520 kb on + strand, within Rru_A2071at 2396.520 kb on + strand, within Rru_A2071at 2396.520 kb on + strand, within Rru_A2071at 2396.520 kb on + strand, within Rru_A2071at 2396.520 kb on + strand, within Rru_A2071at 2396.521 kb on - strand, within Rru_A2071at 2396.640 kb on + strand, within Rru_A2071at 2396.896 kb on - strand, within Rru_A2071at 2396.896 kb on - strand, within Rru_A2071at 2396.910 kb on + strand, within Rru_A2071at 2396.911 kb on - strand, within Rru_A2071at 2396.911 kb on - strand, within Rru_A2071at 2396.958 kb on + strand, within Rru_A2071at 2397.009 kb on + strand, within Rru_A2071at 2397.009 kb on + strand, within Rru_A2071at 2397.009 kb on + strand, within Rru_A2071at 2397.045 kb on + strand, within Rru_A2071at 2397.046 kb on - strand, within Rru_A2071at 2397.159 kb on + strand, within Rru_A2071at 2397.159 kb on + strand, within Rru_A2071at 2397.234 kb on + strandat 2397.234 kb on + strandat 2397.234 kb on + strandat 2397.235 kb on - strandat 2397.235 kb on - strandat 2397.397 kb on - strandat 2399.327 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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2,396,514 + Rru_A2071 0.47 +2.0
2,396,514 + Rru_A2071 0.47 -0.0
2,396,514 + Rru_A2071 0.47 -0.0
2,396,514 + Rru_A2071 0.47 +1.9
2,396,514 + Rru_A2071 0.47 +0.6
2,396,515 - Rru_A2071 0.47 +0.7
2,396,515 - Rru_A2071 0.47 -4.0
2,396,515 - Rru_A2071 0.47 -0.0
2,396,515 - Rru_A2071 0.47 -1.0
2,396,515 - Rru_A2071 0.47 -0.0
2,396,515 - Rru_A2071 0.47 +1.1
2,396,515 - Rru_A2071 0.47 -0.0
2,396,515 - Rru_A2071 0.47 +2.3
2,396,515 - Rru_A2071 0.47 -0.0
2,396,520 + Rru_A2071 0.47 -1.0
2,396,520 + Rru_A2071 0.47 +1.9
2,396,520 + Rru_A2071 0.47 -0.0
2,396,520 + Rru_A2071 0.47 +2.2
2,396,520 + Rru_A2071 0.47 -0.0
2,396,520 + Rru_A2071 0.47 +1.7
2,396,521 - Rru_A2071 0.47 +2.2
2,396,640 + Rru_A2071 0.55 -4.4
2,396,896 - Rru_A2071 0.72 +2.0
2,396,896 - Rru_A2071 0.72 +2.4
2,396,910 + Rru_A2071 0.73 +0.6
2,396,911 - Rru_A2071 0.73 +2.0
2,396,911 - Rru_A2071 0.73 +2.6
2,396,958 + Rru_A2071 0.76 +3.1
2,397,009 + Rru_A2071 0.79 -5.5
2,397,009 + Rru_A2071 0.79 -0.0
2,397,009 + Rru_A2071 0.79 +1.6
2,397,045 + Rru_A2071 0.82 -1.0
2,397,046 - Rru_A2071 0.82 +0.6
2,397,159 + Rru_A2071 0.89 -0.0
2,397,159 + Rru_A2071 0.89 -0.6
2,397,234 + -1.0
2,397,234 + +1.2
2,397,234 + +1.5
2,397,235 - -0.0
2,397,235 - -0.0
2,397,397 - -1.0
2,399,327 + -0.0

Or see this region's nucleotide sequence