Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1761

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1759 and Rru_A1760 are separated by 96 nucleotidesRru_A1760 and Rru_A1761 are separated by 150 nucleotidesRru_A1761 and Rru_A1762 are separated by 54 nucleotidesRru_A1762 and Rru_A1763 are separated by 35 nucleotides Rru_A1759: Rru_A1759 - putative phytoene synthase protein (NCBI), at 2,052,341 to 2,053,189 _A1759 Rru_A1760: Rru_A1760 - Superoxide dismutase (NCBI), at 2,053,286 to 2,053,969 _A1760 Rru_A1761: Rru_A1761 - GCN5-related N-acetyltransferase (NCBI), at 2,054,120 to 2,054,704 _A1761 Rru_A1762: Rru_A1762 - Protein of unknown function DUF598 (NCBI), at 2,054,759 to 2,055,133 _A1762 Rru_A1763: Rru_A1763 - SecF protein (NCBI), at 2,055,169 to 2,056,224 _A1763 Position (kb) 2054 2055Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 2053.222 kb on - strandat 2053.294 kb on + strandat 2054.109 kb on + strandat 2054.109 kb on + strandat 2054.109 kb on + strandat 2054.109 kb on + strandat 2054.109 kb on + strandat 2054.110 kb on - strandat 2054.110 kb on - strandat 2054.110 kb on - strandat 2054.110 kb on - strandat 2054.110 kb on - strandat 2054.119 kb on + strandat 2054.208 kb on - strand, within Rru_A1761at 2054.606 kb on + strand, within Rru_A1761at 2054.607 kb on - strand, within Rru_A1761at 2054.703 kb on - strandat 2054.703 kb on - strandat 2054.760 kb on + strandat 2054.761 kb on - strandat 2055.372 kb on - strand, within Rru_A1763at 2055.372 kb on - strand, within Rru_A1763at 2055.409 kb on - strand, within Rru_A1763at 2055.409 kb on - strand, within Rru_A1763at 2055.558 kb on + strand, within Rru_A1763at 2055.614 kb on + strand, within Rru_A1763at 2055.615 kb on - strand, within Rru_A1763

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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2,053,222 - -0.1
2,053,294 + -0.1
2,054,109 + +1.8
2,054,109 + -0.1
2,054,109 + +0.4
2,054,109 + -0.1
2,054,109 + +2.7
2,054,110 - +1.5
2,054,110 - -5.0
2,054,110 - -3.1
2,054,110 - +0.9
2,054,110 - +1.2
2,054,119 + +0.1
2,054,208 - Rru_A1761 0.15 -0.1
2,054,606 + Rru_A1761 0.83 +1.5
2,054,607 - Rru_A1761 0.83 +2.6
2,054,703 - +1.8
2,054,703 - +2.9
2,054,760 + +2.5
2,054,761 - -5.9
2,055,372 - Rru_A1763 0.19 +1.7
2,055,372 - Rru_A1763 0.19 -0.1
2,055,409 - Rru_A1763 0.23 +1.5
2,055,409 - Rru_A1763 0.23 -0.1
2,055,558 + Rru_A1763 0.37 -0.6
2,055,614 + Rru_A1763 0.42 +1.6
2,055,615 - Rru_A1763 0.42 -0.1

Or see this region's nucleotide sequence