Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1590

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1588 and Rru_A1589 are separated by 5 nucleotidesRru_A1589 and Rru_A1590 overlap by 1 nucleotidesRru_A1590 and Rru_A1591 are separated by 48 nucleotidesRru_A1591 and Rru_A1592 overlap by 4 nucleotides Rru_A1588: Rru_A1588 - Uridylate kinase (NCBI), at 1,872,480 to 1,873,232 _A1588 Rru_A1589: Rru_A1589 - Ribosome recycling factor (NCBI), at 1,873,238 to 1,873,813 _A1589 Rru_A1590: Rru_A1590 - Di-trans-poly-cis-decaprenylcistransferase (NCBI), at 1,873,813 to 1,874,547 _A1590 Rru_A1591: Rru_A1591 - Phosphatidate cytidylyltransferase (NCBI), at 1,874,596 to 1,875,402 _A1591 Rru_A1592: Rru_A1592 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase (NCBI), at 1,875,399 to 1,876,601 _A1592 Position (kb) 1873 1874 1875Strain fitness (log2 ratio) -1 0 1at 1874.543 kb on + strandat 1874.543 kb on + strandat 1874.545 kb on + strandat 1874.545 kb on + strandat 1874.545 kb on + strandat 1874.546 kb on - strandat 1874.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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1,874,543 + -0.1
1,874,543 + -0.1
1,874,545 + -0.6
1,874,545 + +1.6
1,874,545 + -0.1
1,874,546 - -0.1
1,874,546 - +1.2

Or see this region's nucleotide sequence