Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1265

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1264 and Rru_A1265 are separated by 193 nucleotidesRru_A1265 and Rru_A1266 are separated by 51 nucleotidesRru_A1266 and Rru_A1267 are separated by 58 nucleotides Rru_A1264: Rru_A1264 - Short-chain dehydrogenase/reductase SDR (NCBI), at 1,485,291 to 1,486,073 _A1264 Rru_A1265: Rru_A1265 - Transcriptional Regulator, DeoR family (NCBI), at 1,486,267 to 1,487,124 _A1265 Rru_A1266: Rru_A1266 - Photosystem I assembly BtpA (NCBI), at 1,487,176 to 1,487,979 _A1266 Rru_A1267: Rru_A1267 - Carbohydrate kinase, FGGY (NCBI), at 1,488,038 to 1,489,543 _A1267 Position (kb) 1486 1487 1488Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1485.292 kb on + strandat 1485.293 kb on - strandat 1485.427 kb on + strand, within Rru_A1264at 1485.427 kb on + strand, within Rru_A1264at 1485.428 kb on - strand, within Rru_A1264at 1485.428 kb on - strand, within Rru_A1264at 1485.428 kb on - strand, within Rru_A1264at 1485.428 kb on - strand, within Rru_A1264at 1485.607 kb on + strand, within Rru_A1264at 1485.985 kb on + strand, within Rru_A1264at 1485.986 kb on - strand, within Rru_A1264at 1486.606 kb on + strand, within Rru_A1265at 1486.748 kb on - strand, within Rru_A1265at 1486.882 kb on + strand, within Rru_A1265at 1487.004 kb on + strand, within Rru_A1265

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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1,485,292 + -1.0
1,485,293 - +2.2
1,485,427 + Rru_A1264 0.17 -0.0
1,485,427 + Rru_A1264 0.17 +2.7
1,485,428 - Rru_A1264 0.17 -3.8
1,485,428 - Rru_A1264 0.17 +1.2
1,485,428 - Rru_A1264 0.17 -0.0
1,485,428 - Rru_A1264 0.17 +2.6
1,485,607 + Rru_A1264 0.40 -0.0
1,485,985 + Rru_A1264 0.89 +1.8
1,485,986 - Rru_A1264 0.89 -0.2
1,486,606 + Rru_A1265 0.40 +0.4
1,486,748 - Rru_A1265 0.56 -0.0
1,486,882 + Rru_A1265 0.72 -0.0
1,487,004 + Rru_A1265 0.86 +0.4

Or see this region's nucleotide sequence