Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1178 and Rru_A1179 are separated by 107 nucleotides Rru_A1179 and Rru_A1180 overlap by 4 nucleotides Rru_A1180 and Rru_A1181 are separated by 99 nucleotides
Rru_A1178: Rru_A1178 - Anticodon-binding (NCBI), at 1,394,721 to 1,395,884
_A1178
Rru_A1179: Rru_A1179 - Transcriptional Regulator, DeoR family (NCBI), at 1,395,992 to 1,396,756
_A1179
Rru_A1180: Rru_A1180 - Major facilitator superfamily MFS_1 (NCBI), at 1,396,753 to 1,397,934
_A1180
Rru_A1181: Rru_A1181 - Cell division transporter substrate-binding protein FtsY (NCBI), at 1,398,034 to 1,399,554
_A1181
Position (kb) 1396
1397
1398 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1395.769 kb on + strand at 1395.769 kb on + strand at 1395.769 kb on + strand at 1395.769 kb on + strand at 1395.769 kb on + strand at 1395.801 kb on + strand at 1395.803 kb on + strand at 1395.803 kb on + strand at 1395.804 kb on - strand at 1395.827 kb on - strand at 1396.553 kb on + strand, within Rru_A1179 at 1396.741 kb on + strand at 1396.752 kb on + strand at 1396.753 kb on - strand at 1397.694 kb on + strand, within Rru_A1180 at 1397.695 kb on - strand, within Rru_A1180 at 1397.695 kb on - strand, within Rru_A1180 at 1397.695 kb on - strand, within Rru_A1180 at 1397.695 kb on - strand, within Rru_A1180 at 1397.780 kb on - strand, within Rru_A1180 at 1397.932 kb on + strand at 1397.933 kb on - strand at 1397.933 kb on - strand at 1398.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 1,395,769 + -5.1 1,395,769 + -0.0 1,395,769 + -0.0 1,395,769 + +2.3 1,395,769 + -4.5 1,395,801 + +1.4 1,395,803 + +2.4 1,395,803 + -0.5 1,395,804 - -0.0 1,395,827 - -0.0 1,396,553 + Rru_A1179 0.73 -1.2 1,396,741 + -0.0 1,396,752 + +1.6 1,396,753 - +2.0 1,397,694 + Rru_A1180 0.80 -1.0 1,397,695 - Rru_A1180 0.80 -0.0 1,397,695 - Rru_A1180 0.80 -0.0 1,397,695 - Rru_A1180 0.80 +1.1 1,397,695 - Rru_A1180 0.80 +1.3 1,397,780 - Rru_A1180 0.87 -0.0 1,397,932 + -0.2 1,397,933 - +1.8 1,397,933 - +1.0 1,398,036 - +1.4
Or see this region's nucleotide sequence