Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1065 and Rru_A1066 are separated by 154 nucleotides Rru_A1066 and Rru_A1067 overlap by 4 nucleotides Rru_A1067 and Rru_A1068 are separated by 1 nucleotides
Rru_A1065: Rru_A1065 - Plasmid maintenance system antidote protein (NCBI), at 1,256,071 to 1,256,376
_A1065
Rru_A1066: Rru_A1066 - ABC transporter component (NCBI), at 1,256,531 to 1,257,316
_A1066
Rru_A1067: Rru_A1067 - Cobalamin synthesis protein/P47K (NCBI), at 1,257,313 to 1,258,014
_A1067
Rru_A1068: Rru_A1068 - Aminotransferase, class V (NCBI), at 1,258,016 to 1,259,197
_A1068
Position (kb) 1257
1258
1259 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1256.747 kb on + strand, within Rru_A1066 at 1257.014 kb on - strand, within Rru_A1066 at 1257.014 kb on - strand, within Rru_A1066 at 1257.433 kb on + strand, within Rru_A1067 at 1257.433 kb on + strand, within Rru_A1067 at 1257.434 kb on - strand, within Rru_A1067 at 1257.490 kb on + strand, within Rru_A1067 at 1257.490 kb on + strand, within Rru_A1067 at 1257.491 kb on - strand, within Rru_A1067 at 1257.491 kb on - strand, within Rru_A1067 at 1257.534 kb on - strand, within Rru_A1067 at 1257.599 kb on + strand, within Rru_A1067 at 1257.600 kb on - strand, within Rru_A1067 at 1257.619 kb on + strand, within Rru_A1067 at 1257.619 kb on + strand, within Rru_A1067 at 1257.619 kb on + strand, within Rru_A1067 at 1257.620 kb on - strand, within Rru_A1067 at 1258.029 kb on - strand at 1258.039 kb on + strand at 1258.039 kb on + strand at 1258.040 kb on - strand at 1258.040 kb on - strand at 1258.103 kb on + strand at 1258.103 kb on + strand at 1258.104 kb on - strand at 1258.104 kb on - strand at 1258.104 kb on - strand at 1258.240 kb on + strand, within Rru_A1068 at 1258.241 kb on - strand, within Rru_A1068 at 1258.262 kb on + strand, within Rru_A1068 at 1258.262 kb on + strand, within Rru_A1068 at 1258.262 kb on + strand, within Rru_A1068 at 1258.262 kb on + strand, within Rru_A1068 at 1258.263 kb on - strand, within Rru_A1068 at 1258.263 kb on - strand, within Rru_A1068 at 1258.263 kb on - strand, within Rru_A1068 at 1258.263 kb on - strand, within Rru_A1068 at 1258.263 kb on - strand, within Rru_A1068 at 1258.263 kb on - strand, within Rru_A1068 at 1258.471 kb on + strand, within Rru_A1068 at 1258.471 kb on + strand, within Rru_A1068 at 1258.472 kb on - strand, within Rru_A1068 at 1258.658 kb on + strand, within Rru_A1068 at 1258.658 kb on + strand, within Rru_A1068 at 1258.659 kb on - strand, within Rru_A1068 at 1258.868 kb on + strand, within Rru_A1068 at 1258.869 kb on - strand, within Rru_A1068
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 1,256,747 + Rru_A1066 0.27 -1.0 1,257,014 - Rru_A1066 0.61 -0.0 1,257,014 - Rru_A1066 0.61 +0.1 1,257,433 + Rru_A1067 0.17 -0.0 1,257,433 + Rru_A1067 0.17 +2.4 1,257,434 - Rru_A1067 0.17 -1.0 1,257,490 + Rru_A1067 0.25 +2.0 1,257,490 + Rru_A1067 0.25 +0.2 1,257,491 - Rru_A1067 0.25 +2.0 1,257,491 - Rru_A1067 0.25 +1.7 1,257,534 - Rru_A1067 0.31 +0.1 1,257,599 + Rru_A1067 0.41 +1.3 1,257,600 - Rru_A1067 0.41 +1.8 1,257,619 + Rru_A1067 0.44 -1.6 1,257,619 + Rru_A1067 0.44 -1.0 1,257,619 + Rru_A1067 0.44 -1.0 1,257,620 - Rru_A1067 0.44 +0.9 1,258,029 - -2.0 1,258,039 + -0.0 1,258,039 + +1.2 1,258,040 - -0.0 1,258,040 - +1.4 1,258,103 + +2.0 1,258,103 + +1.2 1,258,104 - -0.0 1,258,104 - -0.0 1,258,104 - -0.0 1,258,240 + Rru_A1068 0.19 -0.0 1,258,241 - Rru_A1068 0.19 +2.2 1,258,262 + Rru_A1068 0.21 -0.0 1,258,262 + Rru_A1068 0.21 +0.1 1,258,262 + Rru_A1068 0.21 -0.0 1,258,262 + Rru_A1068 0.21 +2.8 1,258,263 - Rru_A1068 0.21 +1.1 1,258,263 - Rru_A1068 0.21 -0.0 1,258,263 - Rru_A1068 0.21 +1.2 1,258,263 - Rru_A1068 0.21 +2.5 1,258,263 - Rru_A1068 0.21 +1.1 1,258,263 - Rru_A1068 0.21 +1.9 1,258,471 + Rru_A1068 0.38 -0.0 1,258,471 + Rru_A1068 0.38 +2.0 1,258,472 - Rru_A1068 0.39 -0.0 1,258,658 + Rru_A1068 0.54 +2.7 1,258,658 + Rru_A1068 0.54 -0.0 1,258,659 - Rru_A1068 0.54 +2.0 1,258,868 + Rru_A1068 0.72 +1.2 1,258,869 - Rru_A1068 0.72 +2.3
Or see this region's nucleotide sequence