Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0773

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0772 and Rru_A0773 are separated by 5 nucleotidesRru_A0773 and Rru_A0774 are separated by 30 nucleotides Rru_A0772: Rru_A0772 - Oxidoreductase/nitrogenase, component 1 (NCBI), at 922,093 to 923,418 _A0772 Rru_A0773: Rru_A0773 - Nitrogenase (NCBI), at 923,424 to 924,887 _A0773 Rru_A0774: Rru_A0774 - O-acetylhomoserine/O-acetylserine sulfhydrylase (NCBI), at 924,918 to 926,234 _A0774 Position (kb) 923 924 925Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 922.562 kb on + strand, within Rru_A0772at 922.571 kb on + strand, within Rru_A0772at 922.571 kb on + strand, within Rru_A0772at 922.572 kb on - strand, within Rru_A0772at 922.572 kb on - strand, within Rru_A0772at 922.574 kb on + strand, within Rru_A0772at 922.574 kb on + strand, within Rru_A0772at 922.574 kb on + strand, within Rru_A0772at 922.575 kb on - strand, within Rru_A0772at 922.770 kb on + strand, within Rru_A0772at 922.834 kb on - strand, within Rru_A0772at 923.159 kb on - strand, within Rru_A0772at 923.159 kb on - strand, within Rru_A0772at 923.254 kb on - strand, within Rru_A0772at 923.255 kb on + strand, within Rru_A0772at 923.255 kb on + strand, within Rru_A0772at 923.256 kb on - strand, within Rru_A0772at 923.270 kb on + strand, within Rru_A0772at 923.425 kb on + strandat 923.443 kb on + strandat 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.597 kb on - strand, within Rru_A0773at 923.597 kb on - strand, within Rru_A0773at 923.597 kb on - strand, within Rru_A0773at 923.660 kb on + strand, within Rru_A0773at 923.661 kb on - strand, within Rru_A0773at 923.722 kb on + strand, within Rru_A0773at 923.722 kb on + strand, within Rru_A0773at 923.861 kb on + strand, within Rru_A0773at 923.862 kb on - strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.966 kb on - strand, within Rru_A0773at 923.966 kb on - strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.257 kb on + strand, within Rru_A0773at 924.488 kb on - strand, within Rru_A0773at 924.817 kb on + strandat 924.818 kb on - strandat 925.105 kb on + strand, within Rru_A0774at 925.105 kb on + strand, within Rru_A0774at 925.105 kb on + strand, within Rru_A0774at 925.106 kb on - strand, within Rru_A0774at 925.106 kb on - strand, within Rru_A0774at 925.106 kb on - strand, within Rru_A0774at 925.198 kb on + strand, within Rru_A0774at 925.198 kb on + strand, within Rru_A0774at 925.199 kb on - strand, within Rru_A0774at 925.199 kb on - strand, within Rru_A0774at 925.199 kb on - strand, within Rru_A0774at 925.279 kb on + strand, within Rru_A0774at 925.280 kb on - strand, within Rru_A0774at 925.398 kb on + strand, within Rru_A0774at 925.399 kb on - strand, within Rru_A0774at 925.421 kb on + strand, within Rru_A0774at 925.421 kb on + strand, within Rru_A0774at 925.423 kb on + strand, within Rru_A0774at 925.423 kb on + strand, within Rru_A0774at 925.423 kb on + strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.474 kb on + strand, within Rru_A0774at 925.475 kb on - strand, within Rru_A0774at 925.585 kb on + strand, within Rru_A0774at 925.585 kb on + strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.600 kb on + strand, within Rru_A0774at 925.600 kb on + strand, within Rru_A0774at 925.601 kb on - strand, within Rru_A0774at 925.601 kb on - strand, within Rru_A0774at 925.656 kb on - strand, within Rru_A0774at 925.658 kb on + strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.757 kb on - strand, within Rru_A0774at 925.877 kb on - strand, within Rru_A0774

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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922,562 + Rru_A0772 0.35 +0.4
922,571 + Rru_A0772 0.36 -0.0
922,571 + Rru_A0772 0.36 -1.6
922,572 - Rru_A0772 0.36 -0.0
922,572 - Rru_A0772 0.36 +1.8
922,574 + Rru_A0772 0.36 +1.6
922,574 + Rru_A0772 0.36 +1.7
922,574 + Rru_A0772 0.36 +2.1
922,575 - Rru_A0772 0.36 +2.0
922,770 + Rru_A0772 0.51 -3.6
922,834 - Rru_A0772 0.56 -0.0
923,159 - Rru_A0772 0.80 -2.0
923,159 - Rru_A0772 0.80 +1.4
923,254 - Rru_A0772 0.88 +0.8
923,255 + Rru_A0772 0.88 -0.0
923,255 + Rru_A0772 0.88 -0.2
923,256 - Rru_A0772 0.88 -0.0
923,270 + Rru_A0772 0.89 +2.7
923,425 + +2.0
923,443 + -0.0
923,596 + Rru_A0773 0.12 +2.3
923,596 + Rru_A0773 0.12 -0.8
923,596 + Rru_A0773 0.12 +1.6
923,596 + Rru_A0773 0.12 -0.2
923,596 + Rru_A0773 0.12 +1.8
923,596 + Rru_A0773 0.12 -3.3
923,596 + Rru_A0773 0.12 -4.5
923,597 - Rru_A0773 0.12 -0.4
923,597 - Rru_A0773 0.12 -1.0
923,597 - Rru_A0773 0.12 +1.5
923,660 + Rru_A0773 0.16 -0.0
923,661 - Rru_A0773 0.16 +0.9
923,722 + Rru_A0773 0.20 +3.6
923,722 + Rru_A0773 0.20 +1.5
923,861 + Rru_A0773 0.30 +2.1
923,862 - Rru_A0773 0.30 -0.0
923,965 + Rru_A0773 0.37 +2.9
923,965 + Rru_A0773 0.37 -0.0
923,965 + Rru_A0773 0.37 -0.0
923,965 + Rru_A0773 0.37 +0.2
923,965 + Rru_A0773 0.37 +3.0
923,965 + Rru_A0773 0.37 +2.5
923,966 - Rru_A0773 0.37 -0.0
923,966 - Rru_A0773 0.37 -0.0
924,122 + Rru_A0773 0.48 +1.1
924,122 + Rru_A0773 0.48 +1.4
924,122 + Rru_A0773 0.48 +0.8
924,122 + Rru_A0773 0.48 +1.0
924,122 + Rru_A0773 0.48 +1.9
924,123 - Rru_A0773 0.48 -0.0
924,123 - Rru_A0773 0.48 +1.1
924,123 - Rru_A0773 0.48 -0.0
924,123 - Rru_A0773 0.48 +2.6
924,257 + Rru_A0773 0.57 +1.7
924,488 - Rru_A0773 0.73 -0.7
924,817 + +0.8
924,818 - -0.0
925,105 + Rru_A0774 0.14 +2.8
925,105 + Rru_A0774 0.14 -0.0
925,105 + Rru_A0774 0.14 +2.2
925,106 - Rru_A0774 0.14 +3.4
925,106 - Rru_A0774 0.14 +1.7
925,106 - Rru_A0774 0.14 +3.0
925,198 + Rru_A0774 0.21 +2.3
925,198 + Rru_A0774 0.21 +2.3
925,199 - Rru_A0774 0.21 -0.0
925,199 - Rru_A0774 0.21 +2.0
925,199 - Rru_A0774 0.21 -0.9
925,279 + Rru_A0774 0.27 -6.0
925,280 - Rru_A0774 0.27 -0.0
925,398 + Rru_A0774 0.36 +2.0
925,399 - Rru_A0774 0.37 +1.5
925,421 + Rru_A0774 0.38 -0.0
925,421 + Rru_A0774 0.38 -0.0
925,423 + Rru_A0774 0.38 +2.5
925,423 + Rru_A0774 0.38 -0.0
925,423 + Rru_A0774 0.38 +2.0
925,424 - Rru_A0774 0.38 +1.3
925,424 - Rru_A0774 0.38 +3.2
925,424 - Rru_A0774 0.38 -0.5
925,424 - Rru_A0774 0.38 -1.0
925,424 - Rru_A0774 0.38 -0.0
925,424 - Rru_A0774 0.38 +2.0
925,424 - Rru_A0774 0.38 -1.0
925,474 + Rru_A0774 0.42 -0.0
925,475 - Rru_A0774 0.42 -1.3
925,585 + Rru_A0774 0.51 +2.8
925,585 + Rru_A0774 0.51 +0.7
925,586 - Rru_A0774 0.51 -1.9
925,586 - Rru_A0774 0.51 -4.9
925,586 - Rru_A0774 0.51 -1.0
925,586 - Rru_A0774 0.51 +1.3
925,586 - Rru_A0774 0.51 +0.6
925,600 + Rru_A0774 0.52 +1.7
925,600 + Rru_A0774 0.52 +2.0
925,601 - Rru_A0774 0.52 -0.0
925,601 - Rru_A0774 0.52 -0.0
925,656 - Rru_A0774 0.56 +2.2
925,658 + Rru_A0774 0.56 +2.7
925,754 - Rru_A0774 0.63 +2.1
925,754 - Rru_A0774 0.63 -1.0
925,754 - Rru_A0774 0.63 -2.4
925,756 + Rru_A0774 0.64 -1.0
925,756 + Rru_A0774 0.64 +1.6
925,756 + Rru_A0774 0.64 +1.8
925,757 - Rru_A0774 0.64 -0.6
925,877 - Rru_A0774 0.73 -5.3

Or see this region's nucleotide sequence