Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0745

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0744 and Rru_A0745 are separated by 25 nucleotidesRru_A0745 and Rru_A0746 are separated by 217 nucleotides Rru_A0744: Rru_A0744 - 2-nitropropane dioxygenase, NPD (NCBI), at 869,898 to 870,962 _A0744 Rru_A0745: Rru_A0745 - PTSINtr with GAF domain, PtsP (NCBI), at 870,988 to 873,255 _A0745 Rru_A0746: Rru_A0746 - hypothetical protein (NCBI), at 873,473 to 875,005 _A0746 Position (kb) 870 871 872 873 874Strain fitness (log2 ratio) -1 0 1 2 3at 870.966 kb on + strandat 870.967 kb on - strandat 871.038 kb on + strandat 871.038 kb on + strandat 871.129 kb on + strandat 871.129 kb on + strandat 871.129 kb on + strandat 871.129 kb on + strandat 871.129 kb on + strandat 871.130 kb on - strandat 871.130 kb on - strandat 871.353 kb on - strand, within Rru_A0745at 871.408 kb on + strand, within Rru_A0745at 871.408 kb on + strand, within Rru_A0745at 871.409 kb on - strand, within Rru_A0745at 871.409 kb on - strand, within Rru_A0745at 871.409 kb on - strand, within Rru_A0745at 871.585 kb on + strand, within Rru_A0745at 871.585 kb on + strand, within Rru_A0745at 871.585 kb on + strand, within Rru_A0745at 871.585 kb on + strand, within Rru_A0745at 871.586 kb on - strand, within Rru_A0745at 871.586 kb on - strand, within Rru_A0745at 871.726 kb on + strand, within Rru_A0745at 871.727 kb on - strand, within Rru_A0745at 871.785 kb on + strand, within Rru_A0745at 871.785 kb on + strand, within Rru_A0745at 871.785 kb on + strand, within Rru_A0745at 871.786 kb on - strand, within Rru_A0745at 871.786 kb on - strand, within Rru_A0745at 871.786 kb on - strand, within Rru_A0745at 871.798 kb on - strand, within Rru_A0745at 871.798 kb on - strand, within Rru_A0745at 871.882 kb on + strand, within Rru_A0745at 871.882 kb on + strand, within Rru_A0745at 871.882 kb on + strand, within Rru_A0745at 871.882 kb on + strand, within Rru_A0745at 871.882 kb on + strand, within Rru_A0745at 871.882 kb on + strand, within Rru_A0745at 871.883 kb on - strand, within Rru_A0745at 871.883 kb on - strand, within Rru_A0745at 871.885 kb on - strand, within Rru_A0745at 872.032 kb on + strand, within Rru_A0745at 872.032 kb on + strand, within Rru_A0745at 872.032 kb on + strand, within Rru_A0745at 872.032 kb on + strand, within Rru_A0745at 872.032 kb on + strand, within Rru_A0745at 872.032 kb on + strand, within Rru_A0745at 872.033 kb on - strand, within Rru_A0745at 872.033 kb on - strand, within Rru_A0745at 872.033 kb on - strand, within Rru_A0745at 872.033 kb on - strand, within Rru_A0745at 872.033 kb on - strand, within Rru_A0745at 872.115 kb on + strand, within Rru_A0745at 872.115 kb on + strand, within Rru_A0745at 872.116 kb on - strand, within Rru_A0745at 872.241 kb on + strand, within Rru_A0745at 872.241 kb on + strand, within Rru_A0745at 872.278 kb on + strand, within Rru_A0745at 872.278 kb on + strand, within Rru_A0745at 872.279 kb on - strand, within Rru_A0745at 872.279 kb on - strand, within Rru_A0745at 872.279 kb on - strand, within Rru_A0745at 872.279 kb on - strand, within Rru_A0745at 872.470 kb on + strand, within Rru_A0745at 872.470 kb on + strand, within Rru_A0745at 872.470 kb on + strand, within Rru_A0745at 872.470 kb on + strand, within Rru_A0745at 872.551 kb on + strand, within Rru_A0745at 872.944 kb on + strand, within Rru_A0745at 872.944 kb on + strand, within Rru_A0745at 872.944 kb on + strand, within Rru_A0745at 872.945 kb on - strand, within Rru_A0745at 873.147 kb on + strandat 873.166 kb on + strandat 873.167 kb on - strandat 873.240 kb on + strandat 873.240 kb on + strandat 873.240 kb on + strandat 873.240 kb on + strandat 873.253 kb on + strandat 873.374 kb on + strandat 873.375 kb on - strandat 873.423 kb on + strandat 873.424 kb on - strandat 873.424 kb on - strandat 873.428 kb on + strandat 873.428 kb on + strandat 873.429 kb on - strandat 873.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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870,966 + -0.0
870,967 - +2.8
871,038 + +2.5
871,038 + +2.2
871,129 + +1.8
871,129 + +1.7
871,129 + +2.7
871,129 + +1.4
871,129 + +1.8
871,130 - +1.7
871,130 - +2.9
871,353 - Rru_A0745 0.16 -0.0
871,408 + Rru_A0745 0.19 -0.0
871,408 + Rru_A0745 0.19 +2.1
871,409 - Rru_A0745 0.19 +1.8
871,409 - Rru_A0745 0.19 -0.0
871,409 - Rru_A0745 0.19 +2.3
871,585 + Rru_A0745 0.26 +2.6
871,585 + Rru_A0745 0.26 +0.8
871,585 + Rru_A0745 0.26 -0.0
871,585 + Rru_A0745 0.26 +1.5
871,586 - Rru_A0745 0.26 +2.1
871,586 - Rru_A0745 0.26 -0.0
871,726 + Rru_A0745 0.33 +2.4
871,727 - Rru_A0745 0.33 +1.1
871,785 + Rru_A0745 0.35 +1.8
871,785 + Rru_A0745 0.35 +2.4
871,785 + Rru_A0745 0.35 +2.1
871,786 - Rru_A0745 0.35 +0.9
871,786 - Rru_A0745 0.35 +0.4
871,786 - Rru_A0745 0.35 +2.3
871,798 - Rru_A0745 0.36 +2.9
871,798 - Rru_A0745 0.36 +1.7
871,882 + Rru_A0745 0.39 -0.0
871,882 + Rru_A0745 0.39 -0.0
871,882 + Rru_A0745 0.39 +3.1
871,882 + Rru_A0745 0.39 +1.5
871,882 + Rru_A0745 0.39 +1.7
871,882 + Rru_A0745 0.39 +2.8
871,883 - Rru_A0745 0.39 -0.0
871,883 - Rru_A0745 0.39 -0.0
871,885 - Rru_A0745 0.40 -0.0
872,032 + Rru_A0745 0.46 +1.3
872,032 + Rru_A0745 0.46 +1.8
872,032 + Rru_A0745 0.46 +2.0
872,032 + Rru_A0745 0.46 -1.0
872,032 + Rru_A0745 0.46 +1.1
872,032 + Rru_A0745 0.46 +1.3
872,033 - Rru_A0745 0.46 +2.0
872,033 - Rru_A0745 0.46 -1.0
872,033 - Rru_A0745 0.46 +2.1
872,033 - Rru_A0745 0.46 +0.8
872,033 - Rru_A0745 0.46 +1.6
872,115 + Rru_A0745 0.50 +2.4
872,115 + Rru_A0745 0.50 -0.0
872,116 - Rru_A0745 0.50 +1.5
872,241 + Rru_A0745 0.55 -0.0
872,241 + Rru_A0745 0.55 +1.9
872,278 + Rru_A0745 0.57 +1.7
872,278 + Rru_A0745 0.57 +3.2
872,279 - Rru_A0745 0.57 +2.3
872,279 - Rru_A0745 0.57 +2.4
872,279 - Rru_A0745 0.57 -0.0
872,279 - Rru_A0745 0.57 +3.6
872,470 + Rru_A0745 0.65 +1.0
872,470 + Rru_A0745 0.65 -0.0
872,470 + Rru_A0745 0.65 -1.0
872,470 + Rru_A0745 0.65 -0.0
872,551 + Rru_A0745 0.69 +1.9
872,944 + Rru_A0745 0.86 +2.7
872,944 + Rru_A0745 0.86 +2.4
872,944 + Rru_A0745 0.86 +1.8
872,945 - Rru_A0745 0.86 +1.9
873,147 + +2.1
873,166 + -0.0
873,167 - +1.3
873,240 + -1.0
873,240 + +2.1
873,240 + -1.0
873,240 + +2.6
873,253 + +2.5
873,374 + -0.0
873,375 - -0.6
873,423 + +2.0
873,424 - +1.4
873,424 - -0.0
873,428 + -1.0
873,428 + -0.0
873,429 - -0.0
873,429 - -0.0

Or see this region's nucleotide sequence