Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0739 and Rru_A0740 are separated by 43 nucleotides Rru_A0740 and Rru_A0741 are separated by 20 nucleotides Rru_A0741 and Rru_A0742 are separated by 256 nucleotides
Rru_A0739: Rru_A0739 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI), at 864,378 to 865,217
_A0739
Rru_A0740: Rru_A0740 - Protein of unknown function DUF1178 (NCBI), at 865,261 to 865,794
_A0740
Rru_A0741: Rru_A0741 - Signal Transduction Histidine Kinase (NCBI), at 865,815 to 867,311
_A0741
Rru_A0742: Rru_A0742 - Ubiquinone biosynthesis O-methyltransferase (NCBI), at 867,568 to 868,317
_A0742
Position (kb) 865
866
867
868 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 864.859 kb on - strand, within Rru_A0739 at 864.912 kb on + strand, within Rru_A0739 at 864.913 kb on - strand, within Rru_A0739 at 865.002 kb on + strand, within Rru_A0739 at 865.002 kb on + strand, within Rru_A0739 at 865.003 kb on - strand, within Rru_A0739 at 865.003 kb on - strand, within Rru_A0739 at 865.003 kb on - strand, within Rru_A0739 at 865.003 kb on - strand, within Rru_A0739 at 865.003 kb on - strand, within Rru_A0739 at 865.054 kb on - strand, within Rru_A0739 at 865.054 kb on - strand, within Rru_A0739 at 865.054 kb on - strand, within Rru_A0739 at 865.209 kb on - strand at 865.288 kb on + strand at 865.288 kb on + strand at 865.288 kb on + strand at 865.288 kb on + strand at 865.289 kb on - strand at 865.289 kb on - strand at 865.290 kb on + strand at 865.290 kb on + strand at 865.290 kb on + strand at 865.702 kb on + strand, within Rru_A0740 at 865.702 kb on + strand, within Rru_A0740 at 865.702 kb on + strand, within Rru_A0740 at 865.702 kb on + strand, within Rru_A0740 at 865.702 kb on + strand, within Rru_A0740 at 865.703 kb on - strand, within Rru_A0740 at 865.703 kb on - strand, within Rru_A0740 at 865.703 kb on - strand, within Rru_A0740 at 865.703 kb on - strand, within Rru_A0740 at 865.703 kb on - strand, within Rru_A0740 at 865.942 kb on + strand at 865.942 kb on + strand at 865.942 kb on + strand at 865.942 kb on + strand at 865.942 kb on + strand at 865.943 kb on - strand at 865.943 kb on - strand at 865.943 kb on - strand at 865.943 kb on - strand at 865.955 kb on + strand at 865.955 kb on + strand at 865.956 kb on - strand at 866.061 kb on - strand, within Rru_A0741 at 866.061 kb on - strand, within Rru_A0741 at 866.098 kb on + strand, within Rru_A0741 at 866.098 kb on + strand, within Rru_A0741 at 866.098 kb on + strand, within Rru_A0741 at 866.119 kb on - strand, within Rru_A0741 at 866.282 kb on + strand, within Rru_A0741 at 866.282 kb on + strand, within Rru_A0741 at 866.283 kb on - strand, within Rru_A0741 at 866.283 kb on - strand, within Rru_A0741 at 866.283 kb on - strand, within Rru_A0741 at 866.283 kb on - strand, within Rru_A0741 at 866.540 kb on - strand, within Rru_A0741 at 866.678 kb on + strand, within Rru_A0741 at 866.711 kb on + strand, within Rru_A0741 at 866.723 kb on + strand, within Rru_A0741 at 866.723 kb on + strand, within Rru_A0741 at 866.723 kb on + strand, within Rru_A0741 at 866.723 kb on + strand, within Rru_A0741 at 866.724 kb on - strand, within Rru_A0741 at 866.724 kb on - strand, within Rru_A0741 at 866.725 kb on + strand, within Rru_A0741 at 866.725 kb on + strand, within Rru_A0741 at 866.726 kb on - strand, within Rru_A0741 at 867.034 kb on + strand, within Rru_A0741 at 867.034 kb on + strand, within Rru_A0741 at 867.034 kb on + strand, within Rru_A0741 at 867.034 kb on + strand, within Rru_A0741 at 867.035 kb on - strand, within Rru_A0741 at 867.035 kb on - strand, within Rru_A0741 at 867.035 kb on - strand, within Rru_A0741 at 867.188 kb on - strand at 867.188 kb on - strand at 867.229 kb on - strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.447 kb on - strand at 867.450 kb on + strand at 867.450 kb on + strand at 867.450 kb on + strand at 867.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 864,859 - Rru_A0739 0.57 -0.0 864,912 + Rru_A0739 0.64 -0.0 864,913 - Rru_A0739 0.64 +1.4 865,002 + Rru_A0739 0.74 -0.0 865,002 + Rru_A0739 0.74 +3.0 865,003 - Rru_A0739 0.74 +1.8 865,003 - Rru_A0739 0.74 -1.0 865,003 - Rru_A0739 0.74 +1.5 865,003 - Rru_A0739 0.74 -3.0 865,003 - Rru_A0739 0.74 -3.5 865,054 - Rru_A0739 0.80 -1.0 865,054 - Rru_A0739 0.80 +1.5 865,054 - Rru_A0739 0.80 +2.0 865,209 - -1.0 865,288 + +2.0 865,288 + +1.9 865,288 + +0.8 865,288 + -0.0 865,289 - -0.0 865,289 - -0.0 865,290 + +1.3 865,290 + +1.1 865,290 + +0.8 865,702 + Rru_A0740 0.83 +0.1 865,702 + Rru_A0740 0.83 +1.7 865,702 + Rru_A0740 0.83 -0.0 865,702 + Rru_A0740 0.83 -0.0 865,702 + Rru_A0740 0.83 +1.4 865,703 - Rru_A0740 0.83 +0.4 865,703 - Rru_A0740 0.83 -0.0 865,703 - Rru_A0740 0.83 -1.4 865,703 - Rru_A0740 0.83 -0.0 865,703 - Rru_A0740 0.83 -0.0 865,942 + -0.0 865,942 + -0.0 865,942 + -1.0 865,942 + +1.5 865,942 + -0.0 865,943 - -1.0 865,943 - +3.4 865,943 - +2.0 865,943 - -0.0 865,955 + +1.2 865,955 + +0.7 865,956 - -1.0 866,061 - Rru_A0741 0.16 +1.1 866,061 - Rru_A0741 0.16 -0.0 866,098 + Rru_A0741 0.19 -2.8 866,098 + Rru_A0741 0.19 -0.0 866,098 + Rru_A0741 0.19 +2.1 866,119 - Rru_A0741 0.20 -0.0 866,282 + Rru_A0741 0.31 -1.0 866,282 + Rru_A0741 0.31 -0.0 866,283 - Rru_A0741 0.31 +0.8 866,283 - Rru_A0741 0.31 +2.0 866,283 - Rru_A0741 0.31 -0.0 866,283 - Rru_A0741 0.31 -1.0 866,540 - Rru_A0741 0.48 -0.4 866,678 + Rru_A0741 0.58 -0.0 866,711 + Rru_A0741 0.60 -0.0 866,723 + Rru_A0741 0.61 +3.5 866,723 + Rru_A0741 0.61 -0.0 866,723 + Rru_A0741 0.61 +0.9 866,723 + Rru_A0741 0.61 +0.8 866,724 - Rru_A0741 0.61 +1.9 866,724 - Rru_A0741 0.61 -3.5 866,725 + Rru_A0741 0.61 -0.0 866,725 + Rru_A0741 0.61 +1.0 866,726 - Rru_A0741 0.61 -5.1 867,034 + Rru_A0741 0.81 +1.9 867,034 + Rru_A0741 0.81 -0.0 867,034 + Rru_A0741 0.81 -0.0 867,034 + Rru_A0741 0.81 -6.3 867,035 - Rru_A0741 0.81 +1.3 867,035 - Rru_A0741 0.81 -0.0 867,035 - Rru_A0741 0.81 -0.0 867,188 - -0.0 867,188 - -0.0 867,229 - +1.0 867,446 + -0.0 867,446 + -0.0 867,446 + -0.0 867,446 + +0.7 867,446 + -0.0 867,446 + -0.0 867,446 + +1.0 867,447 - +0.3 867,450 + -4.2 867,450 + -3.2 867,450 + -0.0 867,490 + -0.0
Or see this region's nucleotide sequence