Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0699 and Rru_A0700 are separated by 8 nucleotides Rru_A0700 and Rru_A0701 are separated by 343 nucleotides Rru_A0701 and Rru_A0702 are separated by 156 nucleotides
Rru_A0699: Rru_A0699 - Plasmid stabilization system (NCBI), at 829,201 to 829,515
_A0699
Rru_A0700: Rru_A0700 - Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI), at 829,524 to 829,766
_A0700
Rru_A0701: Rru_A0701 - Ribosomal protein S4 (NCBI), at 830,110 to 830,724
_A0701
Rru_A0702: Rru_A0702 - Molybdate ABC transporter, ATP-binding protein (NCBI), at 830,881 to 831,993
_A0702
Position (kb) 830
831 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 829.217 kb on + strand at 829.217 kb on + strand at 829.218 kb on - strand at 829.220 kb on + strand at 829.220 kb on + strand at 829.221 kb on - strand at 829.221 kb on - strand at 829.221 kb on - strand at 829.261 kb on + strand, within Rru_A0699 at 829.262 kb on - strand, within Rru_A0699 at 829.262 kb on - strand, within Rru_A0699 at 829.272 kb on + strand, within Rru_A0699 at 829.273 kb on - strand, within Rru_A0699 at 829.302 kb on - strand, within Rru_A0699 at 829.419 kb on - strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.729 kb on + strand, within Rru_A0700 at 829.783 kb on + strand at 829.784 kb on - strand at 829.808 kb on + strand at 829.808 kb on + strand at 829.808 kb on + strand at 829.809 kb on - strand at 829.809 kb on - strand at 829.809 kb on - strand at 829.809 kb on - strand at 829.810 kb on + strand at 829.810 kb on + strand at 829.811 kb on - strand at 829.811 kb on - strand at 829.811 kb on - strand at 829.811 kb on - strand at 829.830 kb on + strand at 829.831 kb on - strand at 829.831 kb on - strand at 829.908 kb on + strand at 829.993 kb on + strand at 830.874 kb on + strand at 830.882 kb on + strand at 830.883 kb on - strand at 831.147 kb on + strand, within Rru_A0702 at 831.148 kb on - strand, within Rru_A0702 at 831.434 kb on + strand, within Rru_A0702 at 831.435 kb on - strand, within Rru_A0702 at 831.435 kb on - strand, within Rru_A0702 at 831.435 kb on - strand, within Rru_A0702 at 831.668 kb on + strand, within Rru_A0702 at 831.723 kb on + strand, within Rru_A0702 at 831.723 kb on + strand, within Rru_A0702 at 831.724 kb on - strand, within Rru_A0702
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 829,217 + +3.1 829,217 + -1.0 829,218 - +1.7 829,220 + +1.0 829,220 + -0.0 829,221 - +1.7 829,221 - -0.0 829,221 - -0.0 829,261 + Rru_A0699 0.19 +1.8 829,262 - Rru_A0699 0.19 -0.0 829,262 - Rru_A0699 0.19 +0.8 829,272 + Rru_A0699 0.23 +2.6 829,273 - Rru_A0699 0.23 +1.7 829,302 - Rru_A0699 0.32 -1.5 829,419 - Rru_A0699 0.69 -3.5 829,421 + Rru_A0699 0.70 -0.7 829,421 + Rru_A0699 0.70 -0.0 829,421 + Rru_A0699 0.70 -0.0 829,421 + Rru_A0699 0.70 -1.2 829,421 + Rru_A0699 0.70 -0.0 829,421 + Rru_A0699 0.70 -2.0 829,421 + Rru_A0699 0.70 +0.3 829,460 + Rru_A0699 0.82 +2.6 829,460 + Rru_A0699 0.82 -1.0 829,460 + Rru_A0699 0.82 +1.6 829,461 - Rru_A0699 0.83 -1.0 829,461 - Rru_A0699 0.83 -1.6 829,461 - Rru_A0699 0.83 +1.0 829,729 + Rru_A0700 0.84 +0.7 829,783 + -0.0 829,784 - +0.9 829,808 + +2.4 829,808 + +3.0 829,808 + +2.3 829,809 - -1.0 829,809 - +0.4 829,809 - +0.5 829,809 - +0.6 829,810 + -1.0 829,810 + +0.7 829,811 - -0.0 829,811 - +1.7 829,811 - +2.3 829,811 - +1.4 829,830 + +1.0 829,831 - -1.0 829,831 - -0.0 829,908 + +1.7 829,993 + +3.5 830,874 + +0.4 830,882 + -0.0 830,883 - -2.6 831,147 + Rru_A0702 0.24 -0.0 831,148 - Rru_A0702 0.24 +2.5 831,434 + Rru_A0702 0.50 -2.6 831,435 - Rru_A0702 0.50 +2.5 831,435 - Rru_A0702 0.50 +0.4 831,435 - Rru_A0702 0.50 +2.0 831,668 + Rru_A0702 0.71 +0.6 831,723 + Rru_A0702 0.76 -0.0 831,723 + Rru_A0702 0.76 -1.0 831,724 - Rru_A0702 0.76 +0.9
Or see this region's nucleotide sequence