Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0689 and Rru_A0690 are separated by 93 nucleotides Rru_A0690 and Rru_A0691 are separated by 113 nucleotides
Rru_A0689: Rru_A0689 - Cysteine--tRNA ligase (NCBI), at 814,140 to 815,519
_A0689
Rru_A0690: Rru_A0690 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 815,613 to 819,173
_A0690
Rru_A0691: Rru_A0691 - Predicted signal transduction protein (NCBI), at 819,287 to 820,453
_A0691
Position (kb) 815
816
817
818
819
820 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 815.517 kb on + strand at 815.518 kb on - strand at 816.153 kb on + strand, within Rru_A0690 at 816.154 kb on - strand, within Rru_A0690 at 816.171 kb on + strand, within Rru_A0690 at 816.171 kb on + strand, within Rru_A0690 at 816.171 kb on + strand, within Rru_A0690 at 816.243 kb on + strand, within Rru_A0690 at 816.243 kb on + strand, within Rru_A0690 at 816.243 kb on + strand, within Rru_A0690 at 816.243 kb on + strand, within Rru_A0690 at 816.244 kb on - strand, within Rru_A0690 at 816.244 kb on - strand, within Rru_A0690 at 816.244 kb on - strand, within Rru_A0690 at 816.244 kb on - strand, within Rru_A0690 at 816.509 kb on + strand, within Rru_A0690 at 816.538 kb on + strand, within Rru_A0690 at 816.539 kb on - strand, within Rru_A0690 at 816.827 kb on + strand, within Rru_A0690 at 816.827 kb on + strand, within Rru_A0690 at 816.828 kb on - strand, within Rru_A0690 at 816.828 kb on - strand, within Rru_A0690 at 816.915 kb on + strand, within Rru_A0690 at 816.924 kb on + strand, within Rru_A0690 at 816.924 kb on + strand, within Rru_A0690 at 816.925 kb on - strand, within Rru_A0690 at 816.925 kb on - strand, within Rru_A0690 at 816.933 kb on + strand, within Rru_A0690 at 816.933 kb on + strand, within Rru_A0690 at 816.990 kb on - strand, within Rru_A0690 at 817.088 kb on - strand, within Rru_A0690 at 817.160 kb on + strand, within Rru_A0690 at 817.160 kb on + strand, within Rru_A0690 at 817.161 kb on - strand, within Rru_A0690 at 817.161 kb on - strand, within Rru_A0690 at 817.200 kb on + strand, within Rru_A0690 at 817.201 kb on - strand, within Rru_A0690 at 817.201 kb on - strand, within Rru_A0690 at 817.201 kb on - strand, within Rru_A0690 at 817.201 kb on - strand, within Rru_A0690 at 817.545 kb on + strand, within Rru_A0690 at 817.545 kb on + strand, within Rru_A0690 at 817.881 kb on + strand, within Rru_A0690 at 817.882 kb on - strand, within Rru_A0690 at 818.074 kb on + strand, within Rru_A0690 at 818.074 kb on + strand, within Rru_A0690 at 818.074 kb on + strand, within Rru_A0690 at 818.074 kb on + strand, within Rru_A0690 at 818.075 kb on - strand, within Rru_A0690 at 818.075 kb on - strand, within Rru_A0690 at 818.280 kb on + strand, within Rru_A0690 at 818.280 kb on + strand, within Rru_A0690 at 818.451 kb on + strand, within Rru_A0690 at 818.451 kb on + strand, within Rru_A0690 at 818.451 kb on + strand, within Rru_A0690 at 818.452 kb on - strand, within Rru_A0690 at 818.452 kb on - strand, within Rru_A0690 at 818.454 kb on - strand, within Rru_A0690 at 818.454 kb on - strand, within Rru_A0690 at 818.463 kb on - strand, within Rru_A0690 at 818.582 kb on + strand, within Rru_A0690 at 818.583 kb on - strand, within Rru_A0690 at 818.590 kb on - strand, within Rru_A0690 at 819.171 kb on + strand at 819.172 kb on - strand at 819.222 kb on - strand at 819.226 kb on + strand at 819.226 kb on + strand at 819.262 kb on + strand at 819.263 kb on - strand at 819.319 kb on + strand at 819.320 kb on - strand at 819.320 kb on - strand at 819.540 kb on - strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.588 kb on - strand, within Rru_A0691 at 819.588 kb on - strand, within Rru_A0691 at 819.725 kb on + strand, within Rru_A0691 at 819.726 kb on - strand, within Rru_A0691 at 819.726 kb on - strand, within Rru_A0691 at 819.766 kb on + strand, within Rru_A0691 at 819.767 kb on - strand, within Rru_A0691 at 819.767 kb on - strand, within Rru_A0691
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 815,517 + -1.0 815,518 - +0.6 816,153 + Rru_A0690 0.15 +0.7 816,154 - Rru_A0690 0.15 -0.0 816,171 + Rru_A0690 0.16 -4.9 816,171 + Rru_A0690 0.16 -0.0 816,171 + Rru_A0690 0.16 -5.1 816,243 + Rru_A0690 0.18 -0.0 816,243 + Rru_A0690 0.18 +2.9 816,243 + Rru_A0690 0.18 +1.4 816,243 + Rru_A0690 0.18 -0.0 816,244 - Rru_A0690 0.18 -1.0 816,244 - Rru_A0690 0.18 +0.0 816,244 - Rru_A0690 0.18 -0.0 816,244 - Rru_A0690 0.18 -0.0 816,509 + Rru_A0690 0.25 -0.0 816,538 + Rru_A0690 0.26 +1.0 816,539 - Rru_A0690 0.26 -1.6 816,827 + Rru_A0690 0.34 +2.7 816,827 + Rru_A0690 0.34 -1.0 816,828 - Rru_A0690 0.34 +0.5 816,828 - Rru_A0690 0.34 +1.7 816,915 + Rru_A0690 0.37 +2.7 816,924 + Rru_A0690 0.37 +0.9 816,924 + Rru_A0690 0.37 -0.0 816,925 - Rru_A0690 0.37 +1.0 816,925 - Rru_A0690 0.37 -0.0 816,933 + Rru_A0690 0.37 +1.5 816,933 + Rru_A0690 0.37 -0.7 816,990 - Rru_A0690 0.39 +2.0 817,088 - Rru_A0690 0.41 +1.7 817,160 + Rru_A0690 0.43 -0.0 817,160 + Rru_A0690 0.43 +2.1 817,161 - Rru_A0690 0.43 +2.1 817,161 - Rru_A0690 0.43 +1.6 817,200 + Rru_A0690 0.45 -0.0 817,201 - Rru_A0690 0.45 -0.5 817,201 - Rru_A0690 0.45 -0.0 817,201 - Rru_A0690 0.45 +0.3 817,201 - Rru_A0690 0.45 +1.0 817,545 + Rru_A0690 0.54 +3.4 817,545 + Rru_A0690 0.54 +0.7 817,881 + Rru_A0690 0.64 -0.6 817,882 - Rru_A0690 0.64 -0.0 818,074 + Rru_A0690 0.69 +3.4 818,074 + Rru_A0690 0.69 +0.6 818,074 + Rru_A0690 0.69 -0.0 818,074 + Rru_A0690 0.69 +2.7 818,075 - Rru_A0690 0.69 -0.0 818,075 - Rru_A0690 0.69 -0.0 818,280 + Rru_A0690 0.75 +1.5 818,280 + Rru_A0690 0.75 -0.0 818,451 + Rru_A0690 0.80 -5.8 818,451 + Rru_A0690 0.80 +1.8 818,451 + Rru_A0690 0.80 +3.5 818,452 - Rru_A0690 0.80 +2.0 818,452 - Rru_A0690 0.80 -0.0 818,454 - Rru_A0690 0.80 +2.5 818,454 - Rru_A0690 0.80 +0.6 818,463 - Rru_A0690 0.80 +0.2 818,582 + Rru_A0690 0.83 +1.9 818,583 - Rru_A0690 0.83 -2.9 818,590 - Rru_A0690 0.84 -0.0 819,171 + -0.0 819,172 - -0.6 819,222 - -0.0 819,226 + -1.9 819,226 + -0.0 819,262 + +2.6 819,263 - +1.0 819,319 + -1.6 819,320 - +2.3 819,320 - +2.1 819,540 - Rru_A0691 0.22 -0.0 819,587 + Rru_A0691 0.26 -0.5 819,587 + Rru_A0691 0.26 -0.0 819,587 + Rru_A0691 0.26 -1.0 819,587 + Rru_A0691 0.26 +0.9 819,587 + Rru_A0691 0.26 -0.4 819,588 - Rru_A0691 0.26 +2.3 819,588 - Rru_A0691 0.26 -0.0 819,725 + Rru_A0691 0.38 +0.1 819,726 - Rru_A0691 0.38 +2.2 819,726 - Rru_A0691 0.38 -0.0 819,766 + Rru_A0691 0.41 -0.0 819,767 - Rru_A0691 0.41 -0.0 819,767 - Rru_A0691 0.41 +2.1
Or see this region's nucleotide sequence