Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0656 and Rru_A0657 are separated by 10 nucleotides Rru_A0657 and Rru_A0658 are separated by 101 nucleotides Rru_A0658 and Rru_A0659 overlap by 58 nucleotides
Rru_A0656: Rru_A0656 - delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI), at 775,762 to 779,472
_A0656
Rru_A0657: Rru_A0657 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 779,483 to 780,094
_A0657
Rru_A0658: Rru_A0658 - Transcriptional Regulator, LysR family (NCBI), at 780,196 to 781,128
_A0658
Rru_A0659: Rru_A0659 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation (NCBI), at 781,071 to 783,371
_A0659
Position (kb) 780
781
782 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 779.392 kb on + strand at 779.392 kb on + strand at 779.713 kb on - strand, within Rru_A0657 at 779.713 kb on - strand, within Rru_A0657 at 779.713 kb on - strand, within Rru_A0657 at 780.122 kb on - strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.136 kb on - strand at 780.136 kb on - strand at 780.158 kb on + strand at 780.158 kb on + strand at 780.158 kb on + strand at 780.162 kb on + strand at 780.182 kb on + strand at 780.191 kb on + strand at 780.360 kb on + strand, within Rru_A0658 at 780.361 kb on - strand, within Rru_A0658 at 780.396 kb on + strand, within Rru_A0658 at 780.397 kb on - strand, within Rru_A0658 at 780.599 kb on - strand, within Rru_A0658 at 780.736 kb on + strand, within Rru_A0658 at 780.999 kb on + strand, within Rru_A0658 at 781.000 kb on - strand, within Rru_A0658 at 781.000 kb on - strand, within Rru_A0658 at 781.091 kb on + strand at 781.091 kb on + strand at 781.092 kb on - strand at 781.195 kb on + strand at 781.195 kb on + strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.325 kb on + strand, within Rru_A0659 at 781.399 kb on + strand, within Rru_A0659 at 781.400 kb on - strand, within Rru_A0659 at 781.400 kb on - strand, within Rru_A0659 at 781.414 kb on + strand, within Rru_A0659 at 781.455 kb on - strand, within Rru_A0659 at 781.491 kb on + strand, within Rru_A0659 at 781.492 kb on - strand, within Rru_A0659 at 781.709 kb on + strand, within Rru_A0659 at 781.930 kb on + strand, within Rru_A0659 at 781.930 kb on + strand, within Rru_A0659 at 781.930 kb on + strand, within Rru_A0659 at 781.930 kb on + strand, within Rru_A0659 at 781.931 kb on - strand, within Rru_A0659
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 779,392 + +0.6 779,392 + +2.1 779,713 - Rru_A0657 0.38 -1.6 779,713 - Rru_A0657 0.38 +1.9 779,713 - Rru_A0657 0.38 +0.0 780,122 - +0.0 780,135 + +0.0 780,135 + +0.0 780,135 + +0.0 780,135 + +0.9 780,135 + -1.6 780,135 + -0.2 780,136 - +1.0 780,136 - +2.2 780,158 + -1.0 780,158 + +1.3 780,158 + +1.5 780,162 + +2.8 780,182 + +1.2 780,191 + +2.1 780,360 + Rru_A0658 0.18 +0.0 780,361 - Rru_A0658 0.18 +2.2 780,396 + Rru_A0658 0.21 +0.0 780,397 - Rru_A0658 0.22 +2.5 780,599 - Rru_A0658 0.43 +2.7 780,736 + Rru_A0658 0.58 +0.0 780,999 + Rru_A0658 0.86 +2.4 781,000 - Rru_A0658 0.86 +1.9 781,000 - Rru_A0658 0.86 +0.0 781,091 + -0.9 781,091 + +3.9 781,092 - -1.0 781,195 + -5.3 781,195 + +2.8 781,196 - +0.8 781,196 - +0.0 781,196 - +1.2 781,325 + Rru_A0659 0.11 +2.0 781,399 + Rru_A0659 0.14 +1.5 781,400 - Rru_A0659 0.14 +1.6 781,400 - Rru_A0659 0.14 +2.1 781,414 + Rru_A0659 0.15 +2.3 781,455 - Rru_A0659 0.17 -1.0 781,491 + Rru_A0659 0.18 +2.4 781,492 - Rru_A0659 0.18 +2.4 781,709 + Rru_A0659 0.28 +3.7 781,930 + Rru_A0659 0.37 +2.6 781,930 + Rru_A0659 0.37 +0.0 781,930 + Rru_A0659 0.37 +0.0 781,930 + Rru_A0659 0.37 +0.0 781,931 - Rru_A0659 0.37 +3.7
Or see this region's nucleotide sequence