Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0649

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0647 and Rru_A0648 are separated by 52 nucleotidesRru_A0648 and Rru_A0649 are separated by 3 nucleotidesRru_A0649 and Rru_A0650 are separated by 89 nucleotidesRru_A0650 and Rru_A0651 are separated by 256 nucleotides Rru_A0647: Rru_A0647 - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit (NCBI), at 769,110 to 770,102 _A0647 Rru_A0648: Rru_A0648 - hypothetical protein (NCBI), at 770,155 to 770,793 _A0648 Rru_A0649: Rru_A0649 - hypothetical protein (NCBI), at 770,797 to 771,291 _A0649 Rru_A0650: Rru_A0650 - Cytidine/deoxycytidylate deaminase, zinc-binding region (NCBI), at 771,381 to 771,860 _A0650 Rru_A0651: Rru_A0651 - Glutamine amidotransferase class-I (NCBI), at 772,117 to 772,845 _A0651 Position (kb) 770 771 772Strain fitness (log2 ratio) -2 -1 0 1 2at 770.200 kb on + strandat 770.200 kb on + strandat 770.201 kb on - strandat 770.201 kb on - strandat 770.201 kb on - strandat 770.201 kb on - strandat 770.394 kb on + strand, within Rru_A0648at 770.394 kb on + strand, within Rru_A0648at 770.394 kb on + strand, within Rru_A0648at 770.394 kb on + strand, within Rru_A0648at 770.394 kb on + strand, within Rru_A0648at 770.394 kb on + strand, within Rru_A0648at 770.395 kb on - strand, within Rru_A0648at 770.395 kb on - strand, within Rru_A0648at 770.395 kb on - strand, within Rru_A0648at 770.396 kb on + strand, within Rru_A0648at 770.396 kb on + strand, within Rru_A0648at 770.396 kb on + strand, within Rru_A0648at 770.396 kb on + strand, within Rru_A0648at 770.397 kb on - strand, within Rru_A0648at 770.397 kb on - strand, within Rru_A0648at 770.397 kb on - strand, within Rru_A0648at 770.397 kb on - strand, within Rru_A0648at 770.519 kb on + strand, within Rru_A0648at 770.520 kb on - strand, within Rru_A0648at 770.520 kb on - strand, within Rru_A0648at 770.520 kb on - strand, within Rru_A0648at 770.520 kb on - strand, within Rru_A0648at 770.520 kb on - strand, within Rru_A0648at 770.571 kb on - strand, within Rru_A0648at 770.759 kb on + strandat 770.759 kb on + strandat 770.760 kb on - strandat 770.981 kb on + strand, within Rru_A0649at 770.981 kb on + strand, within Rru_A0649at 770.982 kb on - strand, within Rru_A0649at 770.982 kb on - strand, within Rru_A0649at 771.042 kb on + strand, within Rru_A0649at 771.043 kb on - strand, within Rru_A0649at 771.043 kb on - strand, within Rru_A0649at 771.074 kb on + strand, within Rru_A0649at 771.075 kb on - strand, within Rru_A0649at 771.075 kb on - strand, within Rru_A0649at 771.376 kb on - strandat 771.376 kb on - strandat 771.981 kb on + strandat 771.982 kb on - strandat 771.990 kb on + strandat 771.990 kb on + strandat 771.990 kb on + strandat 771.991 kb on - strandat 771.991 kb on - strandat 772.031 kb on - strandat 772.031 kb on - strandat 772.041 kb on + strandat 772.042 kb on - strandat 772.189 kb on + strandat 772.190 kb on - strand, within Rru_A0651at 772.190 kb on - strand, within Rru_A0651at 772.190 kb on - strand, within Rru_A0651at 772.190 kb on - strand, within Rru_A0651at 772.194 kb on + strand, within Rru_A0651at 772.194 kb on + strand, within Rru_A0651at 772.195 kb on - strand, within Rru_A0651at 772.204 kb on - strand, within Rru_A0651at 772.204 kb on - strand, within Rru_A0651at 772.208 kb on - strand, within Rru_A0651at 772.208 kb on - strand, within Rru_A0651at 772.208 kb on - strand, within Rru_A0651

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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770,200 + -0.0
770,200 + +0.6
770,201 - +0.4
770,201 - -0.0
770,201 - +1.9
770,201 - +1.5
770,394 + Rru_A0648 0.37 -1.6
770,394 + Rru_A0648 0.37 +1.2
770,394 + Rru_A0648 0.37 +2.0
770,394 + Rru_A0648 0.37 +0.8
770,394 + Rru_A0648 0.37 +1.8
770,394 + Rru_A0648 0.37 +1.9
770,395 - Rru_A0648 0.38 -0.0
770,395 - Rru_A0648 0.38 -0.0
770,395 - Rru_A0648 0.38 +1.0
770,396 + Rru_A0648 0.38 +0.9
770,396 + Rru_A0648 0.38 -0.0
770,396 + Rru_A0648 0.38 +0.6
770,396 + Rru_A0648 0.38 +2.2
770,397 - Rru_A0648 0.38 -0.0
770,397 - Rru_A0648 0.38 -0.0
770,397 - Rru_A0648 0.38 +1.3
770,397 - Rru_A0648 0.38 +1.8
770,519 + Rru_A0648 0.57 +2.0
770,520 - Rru_A0648 0.57 +1.3
770,520 - Rru_A0648 0.57 -0.2
770,520 - Rru_A0648 0.57 +1.6
770,520 - Rru_A0648 0.57 +2.6
770,520 - Rru_A0648 0.57 -0.0
770,571 - Rru_A0648 0.65 -0.0
770,759 + -1.6
770,759 + -0.0
770,760 - +0.4
770,981 + Rru_A0649 0.37 +0.1
770,981 + Rru_A0649 0.37 -0.0
770,982 - Rru_A0649 0.37 -0.0
770,982 - Rru_A0649 0.37 -0.0
771,042 + Rru_A0649 0.49 -0.0
771,043 - Rru_A0649 0.50 +0.4
771,043 - Rru_A0649 0.50 -2.0
771,074 + Rru_A0649 0.56 -1.6
771,075 - Rru_A0649 0.56 -0.0
771,075 - Rru_A0649 0.56 -0.0
771,376 - +2.7
771,376 - -1.1
771,981 + +0.6
771,982 - -1.0
771,990 + -0.0
771,990 + -0.0
771,990 + -0.0
771,991 - -0.0
771,991 - +1.9
772,031 - -0.5
772,031 - +1.8
772,041 + -0.6
772,042 - -0.0
772,189 + -0.0
772,190 - Rru_A0651 0.10 -1.6
772,190 - Rru_A0651 0.10 -1.6
772,190 - Rru_A0651 0.10 +2.2
772,190 - Rru_A0651 0.10 -0.1
772,194 + Rru_A0651 0.11 +1.3
772,194 + Rru_A0651 0.11 +1.7
772,195 - Rru_A0651 0.11 -0.0
772,204 - Rru_A0651 0.12 +1.0
772,204 - Rru_A0651 0.12 -0.0
772,208 - Rru_A0651 0.12 -0.0
772,208 - Rru_A0651 0.12 -1.0
772,208 - Rru_A0651 0.12 +2.6

Or see this region's nucleotide sequence