Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0639

Experiment: Succinic Acid; Light intensity 18 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0638 and Rru_A0639 are separated by 73 nucleotidesRru_A0639 and Rru_A0640 are separated by 137 nucleotides Rru_A0638: Rru_A0638 - hypothetical protein (NCBI), at 759,149 to 761,065 _A0638 Rru_A0639: Rru_A0639 - Regulatory protein RecX (NCBI), at 761,139 to 761,735 _A0639 Rru_A0640: Rru_A0640 - ABC-2 transporter component (NCBI), at 761,873 to 762,685 _A0640 Position (kb) 761 762Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 760.141 kb on + strand, within Rru_A0638at 760.141 kb on + strand, within Rru_A0638at 760.479 kb on + strand, within Rru_A0638at 760.479 kb on + strand, within Rru_A0638at 760.479 kb on + strand, within Rru_A0638at 760.480 kb on - strand, within Rru_A0638at 760.602 kb on + strand, within Rru_A0638at 760.602 kb on + strand, within Rru_A0638at 760.602 kb on + strand, within Rru_A0638at 760.602 kb on + strand, within Rru_A0638at 760.602 kb on + strand, within Rru_A0638at 760.603 kb on - strand, within Rru_A0638at 760.603 kb on - strand, within Rru_A0638at 760.668 kb on + strand, within Rru_A0638at 760.668 kb on + strand, within Rru_A0638at 760.777 kb on + strand, within Rru_A0638at 760.777 kb on + strand, within Rru_A0638at 760.777 kb on + strand, within Rru_A0638at 760.778 kb on - strand, within Rru_A0638at 760.797 kb on - strand, within Rru_A0638at 760.857 kb on + strand, within Rru_A0638at 760.858 kb on - strand, within Rru_A0638at 760.987 kb on + strandat 760.987 kb on + strandat 760.987 kb on + strandat 760.988 kb on - strandat 760.988 kb on - strandat 761.036 kb on + strandat 761.036 kb on + strandat 761.036 kb on + strandat 761.036 kb on + strandat 761.036 kb on + strandat 761.037 kb on - strandat 761.038 kb on + strandat 761.052 kb on - strandat 761.159 kb on + strandat 761.159 kb on + strandat 761.160 kb on - strandat 761.160 kb on - strandat 761.656 kb on + strand, within Rru_A0639at 761.657 kb on - strand, within Rru_A0639at 761.855 kb on + strandat 761.855 kb on + strandat 761.856 kb on - strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.954 kb on + strandat 761.987 kb on + strand, within Rru_A0640at 761.988 kb on - strand, within Rru_A0640at 761.988 kb on - strand, within Rru_A0640at 762.148 kb on + strand, within Rru_A0640at 762.228 kb on + strand, within Rru_A0640at 762.228 kb on + strand, within Rru_A0640at 762.229 kb on - strand, within Rru_A0640at 762.229 kb on - strand, within Rru_A0640at 762.325 kb on + strand, within Rru_A0640at 762.325 kb on + strand, within Rru_A0640at 762.325 kb on + strand, within Rru_A0640at 762.326 kb on - strand, within Rru_A0640at 762.326 kb on - strand, within Rru_A0640at 762.326 kb on - strand, within Rru_A0640at 762.338 kb on - strand, within Rru_A0640at 762.344 kb on + strand, within Rru_A0640at 762.344 kb on + strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.345 kb on - strand, within Rru_A0640at 762.410 kb on - strand, within Rru_A0640at 762.421 kb on + strand, within Rru_A0640at 762.421 kb on + strand, within Rru_A0640at 762.421 kb on + strand, within Rru_A0640at 762.421 kb on + strand, within Rru_A0640at 762.422 kb on - strand, within Rru_A0640at 762.422 kb on - strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.479 kb on + strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.480 kb on - strand, within Rru_A0640at 762.482 kb on - strand, within Rru_A0640at 762.482 kb on - strand, within Rru_A0640at 762.482 kb on - strand, within Rru_A0640at 762.539 kb on + strand, within Rru_A0640at 762.539 kb on + strand, within Rru_A0640at 762.539 kb on + strand, within Rru_A0640at 762.539 kb on + strand, within Rru_A0640at 762.540 kb on - strand, within Rru_A0640at 762.540 kb on - strand, within Rru_A0640at 762.540 kb on - strand, within Rru_A0640at 762.540 kb on - strand, within Rru_A0640at 762.668 kb on + strandat 762.668 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
remove
760,141 + Rru_A0638 0.52 +1.7
760,141 + Rru_A0638 0.52 +0.0
760,479 + Rru_A0638 0.69 +2.2
760,479 + Rru_A0638 0.69 +2.3
760,479 + Rru_A0638 0.69 +0.0
760,480 - Rru_A0638 0.69 +0.5
760,602 + Rru_A0638 0.76 +0.4
760,602 + Rru_A0638 0.76 +0.0
760,602 + Rru_A0638 0.76 +0.0
760,602 + Rru_A0638 0.76 +2.0
760,602 + Rru_A0638 0.76 +0.0
760,603 - Rru_A0638 0.76 +0.4
760,603 - Rru_A0638 0.76 +1.7
760,668 + Rru_A0638 0.79 +0.0
760,668 + Rru_A0638 0.79 +2.1
760,777 + Rru_A0638 0.85 +0.6
760,777 + Rru_A0638 0.85 +2.4
760,777 + Rru_A0638 0.85 +1.4
760,778 - Rru_A0638 0.85 +0.0
760,797 - Rru_A0638 0.86 -0.5
760,857 + Rru_A0638 0.89 -5.6
760,858 - Rru_A0638 0.89 +0.0
760,987 + +2.0
760,987 + +1.7
760,987 + +0.0
760,988 - +2.1
760,988 - -1.2
761,036 + -5.8
761,036 + +2.7
761,036 + +1.4
761,036 + +0.1
761,036 + +1.2
761,037 - +0.0
761,038 + +0.4
761,052 - +2.9
761,159 + +0.5
761,159 + -0.3
761,160 - +1.0
761,160 - +0.5
761,656 + Rru_A0639 0.87 -0.4
761,657 - Rru_A0639 0.87 -2.5
761,855 + +0.0
761,855 + +1.1
761,856 - -1.6
761,954 + -1.0
761,954 + +0.0
761,954 + +0.0
761,954 + +1.2
761,954 + +0.0
761,954 + +1.3
761,987 + Rru_A0640 0.14 +2.0
761,988 - Rru_A0640 0.14 +2.2
761,988 - Rru_A0640 0.14 -0.1
762,148 + Rru_A0640 0.34 +2.4
762,228 + Rru_A0640 0.44 +0.0
762,228 + Rru_A0640 0.44 +0.3
762,229 - Rru_A0640 0.44 +0.8
762,229 - Rru_A0640 0.44 +0.0
762,325 + Rru_A0640 0.56 +0.0
762,325 + Rru_A0640 0.56 +1.5
762,325 + Rru_A0640 0.56 -1.2
762,326 - Rru_A0640 0.56 +0.0
762,326 - Rru_A0640 0.56 -1.1
762,326 - Rru_A0640 0.56 +1.8
762,338 - Rru_A0640 0.57 +1.4
762,344 + Rru_A0640 0.58 +1.7
762,344 + Rru_A0640 0.58 +1.4
762,345 - Rru_A0640 0.58 +2.5
762,345 - Rru_A0640 0.58 +0.0
762,345 - Rru_A0640 0.58 +1.3
762,345 - Rru_A0640 0.58 -0.6
762,345 - Rru_A0640 0.58 +1.0
762,410 - Rru_A0640 0.66 +1.9
762,421 + Rru_A0640 0.67 -1.6
762,421 + Rru_A0640 0.67 +0.0
762,421 + Rru_A0640 0.67 +2.2
762,421 + Rru_A0640 0.67 +0.0
762,422 - Rru_A0640 0.68 +2.6
762,422 - Rru_A0640 0.68 -4.4
762,479 + Rru_A0640 0.75 -1.0
762,479 + Rru_A0640 0.75 +2.1
762,479 + Rru_A0640 0.75 +2.2
762,479 + Rru_A0640 0.75 +0.4
762,479 + Rru_A0640 0.75 +1.6
762,479 + Rru_A0640 0.75 -3.8
762,479 + Rru_A0640 0.75 -0.3
762,479 + Rru_A0640 0.75 +0.6
762,480 - Rru_A0640 0.75 -1.6
762,480 - Rru_A0640 0.75 +1.7
762,480 - Rru_A0640 0.75 +3.2
762,480 - Rru_A0640 0.75 +0.0
762,480 - Rru_A0640 0.75 +2.3
762,480 - Rru_A0640 0.75 +0.0
762,480 - Rru_A0640 0.75 +0.2
762,480 - Rru_A0640 0.75 +0.0
762,480 - Rru_A0640 0.75 +0.0
762,480 - Rru_A0640 0.75 -2.1
762,480 - Rru_A0640 0.75 +0.0
762,480 - Rru_A0640 0.75 +1.2
762,480 - Rru_A0640 0.75 +1.0
762,480 - Rru_A0640 0.75 +0.0
762,482 - Rru_A0640 0.75 +2.4
762,482 - Rru_A0640 0.75 +2.5
762,482 - Rru_A0640 0.75 +0.0
762,539 + Rru_A0640 0.82 +0.0
762,539 + Rru_A0640 0.82 +0.0
762,539 + Rru_A0640 0.82 +1.8
762,539 + Rru_A0640 0.82 +0.7
762,540 - Rru_A0640 0.82 +1.2
762,540 - Rru_A0640 0.82 +0.0
762,540 - Rru_A0640 0.82 +1.7
762,540 - Rru_A0640 0.82 +0.9
762,668 + -1.0
762,668 + +0.0

Or see this region's nucleotide sequence