Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0629

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0628 and Rru_A0629 overlap by 1 nucleotidesRru_A0629 and Rru_A0630 are separated by 22 nucleotidesRru_A0630 and Rru_A0631 are separated by 38 nucleotides Rru_A0628: Rru_A0628 - PUCC protein (NCBI), at 746,498 to 747,847 _A0628 Rru_A0629: Rru_A0629 - Geranylgeranyl reductase (NCBI), at 747,847 to 749,088 _A0629 Rru_A0630: Rru_A0630 - hypothetical protein (NCBI), at 749,111 to 749,464 _A0630 Rru_A0631: Rru_A0631 - Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI), at 749,503 to 750,855 _A0631 Position (kb) 747 748 749 750Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 747.017 kb on + strand, within Rru_A0628at 747.017 kb on + strand, within Rru_A0628at 747.018 kb on - strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.020 kb on - strand, within Rru_A0628at 747.020 kb on - strand, within Rru_A0628at 747.236 kb on + strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628at 747.713 kb on + strandat 747.713 kb on + strandat 748.291 kb on - strand, within Rru_A0629at 748.307 kb on - strand, within Rru_A0629at 748.307 kb on - strand, within Rru_A0629at 748.463 kb on - strand, within Rru_A0629at 748.463 kb on - strand, within Rru_A0629at 748.516 kb on + strand, within Rru_A0629at 748.517 kb on - strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.548 kb on - strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.766 kb on - strand, within Rru_A0629at 748.993 kb on + strandat 748.994 kb on - strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.553 kb on - strandat 749.610 kb on - strandat 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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747,017 + Rru_A0628 0.38 -2.5
747,017 + Rru_A0628 0.38 +0.0
747,018 - Rru_A0628 0.39 +0.0
747,019 + Rru_A0628 0.39 +0.0
747,019 + Rru_A0628 0.39 -0.4
747,019 + Rru_A0628 0.39 +0.0
747,020 - Rru_A0628 0.39 +0.0
747,020 - Rru_A0628 0.39 +0.0
747,236 + Rru_A0628 0.55 +2.0
747,237 - Rru_A0628 0.55 +0.1
747,237 - Rru_A0628 0.55 +0.0
747,237 - Rru_A0628 0.55 +0.0
747,713 + +2.5
747,713 + +0.0
748,291 - Rru_A0629 0.36 -5.2
748,307 - Rru_A0629 0.37 +0.0
748,307 - Rru_A0629 0.37 -0.9
748,463 - Rru_A0629 0.50 +1.6
748,463 - Rru_A0629 0.50 +0.0
748,516 + Rru_A0629 0.54 +0.0
748,517 - Rru_A0629 0.54 +0.5
748,547 + Rru_A0629 0.56 +0.0
748,547 + Rru_A0629 0.56 -0.4
748,547 + Rru_A0629 0.56 +0.4
748,548 - Rru_A0629 0.56 +0.1
748,762 + Rru_A0629 0.74 +1.2
748,762 + Rru_A0629 0.74 +0.7
748,762 + Rru_A0629 0.74 +0.0
748,762 + Rru_A0629 0.74 +0.6
748,762 + Rru_A0629 0.74 +0.0
748,762 + Rru_A0629 0.74 +0.0
748,762 + Rru_A0629 0.74 -0.4
748,762 + Rru_A0629 0.74 +0.6
748,763 - Rru_A0629 0.74 +1.2
748,763 - Rru_A0629 0.74 +0.9
748,763 - Rru_A0629 0.74 +0.0
748,763 - Rru_A0629 0.74 -1.0
748,763 - Rru_A0629 0.74 +0.3
748,766 - Rru_A0629 0.74 +0.0
748,993 + +0.0
748,994 - -2.0
749,032 + +0.0
749,032 + +0.3
749,032 + +0.8
749,032 + +0.0
749,032 + +0.0
749,033 - -0.8
749,033 - +0.0
749,033 - +0.0
749,033 - +0.1
749,033 - +0.6
749,033 - -1.2
749,033 - -2.2
749,552 + -0.0
749,552 + -0.0
749,552 + +1.8
749,552 + -0.0
749,553 - -0.0
749,610 - -4.6
749,849 + Rru_A0631 0.26 -0.0
749,849 + Rru_A0631 0.26 -0.0
749,849 + Rru_A0631 0.26 +2.7
749,849 + Rru_A0631 0.26 +2.8
749,849 + Rru_A0631 0.26 +0.4
749,849 + Rru_A0631 0.26 +2.9
749,850 - Rru_A0631 0.26 +1.4
749,850 - Rru_A0631 0.26 +0.6
749,850 - Rru_A0631 0.26 +2.1
749,850 - Rru_A0631 0.26 +2.2

Or see this region's nucleotide sequence