Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0615

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0614 and Rru_A0615 are separated by 237 nucleotidesRru_A0615 and Rru_A0616 are separated by 40 nucleotidesRru_A0616 and Rru_A0617 are separated by 15 nucleotides Rru_A0614: Rru_A0614 - hypothetical protein (NCBI), at 728,922 to 729,809 _A0614 Rru_A0615: Rru_A0615 - photosynthetic complex assembly protein (NCBI), at 730,047 to 730,514 _A0615 Rru_A0616: Rru_A0616 - photosynthetic complex assembly protein (NCBI), at 730,555 to 731,229 _A0616 Rru_A0617: Rru_A0617 - Photosynthetic reaction center, H-chain (NCBI), at 731,245 to 732,018 _A0617 Position (kb) 730 731Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.078 kb on + strand, within Rru_A0614at 729.078 kb on + strand, within Rru_A0614at 729.105 kb on + strand, within Rru_A0614at 729.290 kb on + strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.462 kb on + strand, within Rru_A0614at 729.462 kb on + strand, within Rru_A0614at 729.463 kb on - strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.619 kb on + strand, within Rru_A0614at 729.619 kb on + strand, within Rru_A0614at 729.620 kb on - strand, within Rru_A0614at 729.716 kb on + strand, within Rru_A0614at 729.717 kb on - strand, within Rru_A0614at 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.781 kb on + strandat 729.782 kb on - strandat 730.048 kb on + strandat 730.049 kb on - strandat 730.081 kb on + strandat 730.082 kb on - strandat 730.195 kb on + strand, within Rru_A0615at 730.268 kb on + strand, within Rru_A0615at 730.269 kb on - strand, within Rru_A0615at 730.269 kb on - strand, within Rru_A0615at 730.488 kb on + strandat 730.488 kb on + strandat 730.489 kb on - strandat 730.656 kb on + strand, within Rru_A0616at 730.656 kb on + strand, within Rru_A0616at 730.656 kb on + strand, within Rru_A0616at 730.656 kb on + strand, within Rru_A0616at 730.658 kb on + strand, within Rru_A0616at 730.658 kb on + strand, within Rru_A0616at 730.658 kb on + strand, within Rru_A0616at 730.658 kb on + strand, within Rru_A0616at 730.659 kb on - strand, within Rru_A0616at 730.659 kb on - strand, within Rru_A0616at 730.735 kb on - strand, within Rru_A0616at 730.775 kb on + strand, within Rru_A0616at 730.776 kb on - strand, within Rru_A0616at 730.776 kb on - strand, within Rru_A0616at 730.832 kb on + strand, within Rru_A0616at 730.873 kb on - strand, within Rru_A0616at 730.934 kb on + strand, within Rru_A0616at 730.935 kb on - strand, within Rru_A0616at 730.935 kb on - strand, within Rru_A0616at 730.935 kb on - strand, within Rru_A0616at 730.935 kb on - strand, within Rru_A0616at 730.935 kb on - strand, within Rru_A0616at 730.964 kb on + strand, within Rru_A0616at 730.964 kb on + strand, within Rru_A0616at 730.965 kb on - strand, within Rru_A0616at 731.051 kb on + strand, within Rru_A0616at 731.051 kb on + strand, within Rru_A0616at 731.052 kb on - strand, within Rru_A0616at 731.093 kb on + strand, within Rru_A0616at 731.246 kb on + strandat 731.247 kb on - strandat 731.247 kb on - strandat 731.279 kb on + strandat 731.279 kb on + strandat 731.282 kb on + strandat 731.283 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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729,067 + Rru_A0614 0.16 -1.0
729,067 + Rru_A0614 0.16 +1.4
729,067 + Rru_A0614 0.16 -0.0
729,067 + Rru_A0614 0.16 +2.1
729,078 + Rru_A0614 0.18 -1.0
729,078 + Rru_A0614 0.18 -0.0
729,105 + Rru_A0614 0.21 -0.0
729,290 + Rru_A0614 0.41 +0.7
729,291 - Rru_A0614 0.42 -0.0
729,291 - Rru_A0614 0.42 -0.0
729,291 - Rru_A0614 0.42 -0.0
729,462 + Rru_A0614 0.61 +0.8
729,462 + Rru_A0614 0.61 +1.7
729,463 - Rru_A0614 0.61 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,566 - Rru_A0614 0.73 -1.2
729,566 - Rru_A0614 0.73 -0.0
729,566 - Rru_A0614 0.73 -1.0
729,619 + Rru_A0614 0.78 +0.8
729,619 + Rru_A0614 0.78 -1.0
729,620 - Rru_A0614 0.79 -2.0
729,716 + Rru_A0614 0.89 -0.7
729,717 - Rru_A0614 0.90 -4.5
729,779 + -0.0
729,779 + -0.6
729,779 + -0.0
729,779 + -0.0
729,779 + +0.6
729,779 + -0.0
729,779 + -0.0
729,780 - +0.8
729,780 - -2.2
729,780 - -0.0
729,780 - -0.4
729,780 - -5.7
729,781 + -0.0
729,782 - -0.0
730,048 + +1.8
730,049 - -0.0
730,081 + +0.6
730,082 - +1.3
730,195 + Rru_A0615 0.32 -3.3
730,268 + Rru_A0615 0.47 -0.0
730,269 - Rru_A0615 0.47 -1.2
730,269 - Rru_A0615 0.47 -1.0
730,488 + -0.0
730,488 + -2.0
730,489 - +0.3
730,656 + Rru_A0616 0.15 +0.2
730,656 + Rru_A0616 0.15 +2.2
730,656 + Rru_A0616 0.15 -0.0
730,656 + Rru_A0616 0.15 +1.3
730,658 + Rru_A0616 0.15 +2.6
730,658 + Rru_A0616 0.15 +1.1
730,658 + Rru_A0616 0.15 -0.5
730,658 + Rru_A0616 0.15 +1.0
730,659 - Rru_A0616 0.15 -1.0
730,659 - Rru_A0616 0.15 +0.7
730,735 - Rru_A0616 0.27 -1.6
730,775 + Rru_A0616 0.33 -0.0
730,776 - Rru_A0616 0.33 -0.0
730,776 - Rru_A0616 0.33 -0.0
730,832 + Rru_A0616 0.41 -1.6
730,873 - Rru_A0616 0.47 -0.0
730,934 + Rru_A0616 0.56 -0.6
730,935 - Rru_A0616 0.56 -0.0
730,935 - Rru_A0616 0.56 +0.6
730,935 - Rru_A0616 0.56 +0.7
730,935 - Rru_A0616 0.56 +0.7
730,935 - Rru_A0616 0.56 +1.0
730,964 + Rru_A0616 0.61 +0.2
730,964 + Rru_A0616 0.61 -1.0
730,965 - Rru_A0616 0.61 -1.0
731,051 + Rru_A0616 0.73 -5.1
731,051 + Rru_A0616 0.73 -0.0
731,052 - Rru_A0616 0.74 -0.0
731,093 + Rru_A0616 0.80 -0.0
731,246 + -0.0
731,247 - -4.9
731,247 - -0.0
731,279 + -0.0
731,279 + -0.0
731,282 + -1.0
731,283 - -1.0

Or see this region's nucleotide sequence