Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0566 and Rru_A0567 are separated by 278 nucleotides Rru_A0567 and Rru_A0568 are separated by 94 nucleotides
Rru_A0566: Rru_A0566 - hypothetical protein (NCBI), at 668,754 to 672,314
_A0566
Rru_A0567: Rru_A0567 - Peptidase U62, modulator of DNA gyrase (NCBI), at 672,593 to 674,035
_A0567
Rru_A0568: Rru_A0568 - chemotaxis sensory transducer (NCBI), at 674,130 to 676,118
_A0568
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 671.643 kb on + strand, within Rru_A0566 at 671.644 kb on - strand, within Rru_A0566 at 671.695 kb on + strand, within Rru_A0566 at 671.696 kb on - strand, within Rru_A0566 at 671.825 kb on + strand, within Rru_A0566 at 671.951 kb on + strand, within Rru_A0566 at 672.232 kb on + strand at 672.232 kb on + strand at 672.233 kb on - strand at 672.331 kb on + strand at 672.332 kb on - strand at 672.332 kb on - strand at 672.400 kb on + strand at 672.531 kb on + strand at 672.531 kb on + strand at 672.531 kb on + strand at 672.532 kb on - strand at 672.532 kb on - strand at 672.716 kb on + strand at 672.776 kb on - strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.948 kb on - strand, within Rru_A0567 at 673.574 kb on + strand, within Rru_A0567 at 673.574 kb on + strand, within Rru_A0567 at 673.575 kb on - strand, within Rru_A0567 at 673.643 kb on + strand, within Rru_A0567 at 673.643 kb on + strand, within Rru_A0567 at 673.644 kb on - strand, within Rru_A0567 at 673.644 kb on - strand, within Rru_A0567 at 673.675 kb on + strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.811 kb on + strand, within Rru_A0567 at 673.811 kb on + strand, within Rru_A0567 at 674.075 kb on + strand at 674.075 kb on + strand at 674.075 kb on + strand at 674.076 kb on - strand at 674.253 kb on - strand at 674.622 kb on - strand, within Rru_A0568
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 671,643 + Rru_A0566 0.81 -1.6 671,644 - Rru_A0566 0.81 +2.4 671,695 + Rru_A0566 0.83 -0.0 671,696 - Rru_A0566 0.83 -0.0 671,825 + Rru_A0566 0.86 -0.0 671,951 + Rru_A0566 0.90 +2.1 672,232 + +2.5 672,232 + +3.5 672,233 - +1.6 672,331 + -0.0 672,332 - +2.3 672,332 - +1.0 672,400 + +1.2 672,531 + +2.2 672,531 + -0.0 672,531 + -0.0 672,532 - -4.6 672,532 - -0.0 672,716 + -0.0 672,776 - Rru_A0567 0.13 -0.0 672,947 + Rru_A0567 0.25 -0.0 672,947 + Rru_A0567 0.25 -0.0 672,947 + Rru_A0567 0.25 +2.8 672,947 + Rru_A0567 0.25 -0.0 672,947 + Rru_A0567 0.25 -0.0 672,948 - Rru_A0567 0.25 +1.7 673,574 + Rru_A0567 0.68 -4.5 673,574 + Rru_A0567 0.68 +3.1 673,575 - Rru_A0567 0.68 +2.2 673,643 + Rru_A0567 0.73 +2.0 673,643 + Rru_A0567 0.73 +0.3 673,644 - Rru_A0567 0.73 -4.4 673,644 - Rru_A0567 0.73 +0.4 673,675 + Rru_A0567 0.75 -0.0 673,676 - Rru_A0567 0.75 +1.4 673,676 - Rru_A0567 0.75 -0.0 673,676 - Rru_A0567 0.75 -0.0 673,676 - Rru_A0567 0.75 -0.0 673,676 - Rru_A0567 0.75 +0.7 673,740 - Rru_A0567 0.79 +2.7 673,740 - Rru_A0567 0.79 +1.8 673,740 - Rru_A0567 0.79 +0.2 673,740 - Rru_A0567 0.79 +1.3 673,811 + Rru_A0567 0.84 -0.5 673,811 + Rru_A0567 0.84 +1.1 674,075 + +1.1 674,075 + -0.0 674,075 + -0.0 674,076 - +3.1 674,253 - -0.0 674,622 - Rru_A0568 0.25 +0.9
Or see this region's nucleotide sequence