Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0564 and Rru_A0565 are separated by 67 nucleotides Rru_A0565 and Rru_A0566 are separated by 185 nucleotides
Rru_A0564: Rru_A0564 - hypothetical protein (NCBI), at 667,041 to 668,165
_A0564
Rru_A0565: Rru_A0565 - hypothetical protein (NCBI), at 668,233 to 668,568
_A0565
Rru_A0566: Rru_A0566 - hypothetical protein (NCBI), at 668,754 to 672,314
_A0566
Position (kb) 668
669 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 667.353 kb on - strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.869 kb on + strand, within Rru_A0564 at 667.940 kb on + strand, within Rru_A0564 at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.235 kb on - strand at 668.235 kb on - strand at 668.256 kb on + strand at 668.257 kb on - strand at 668.703 kb on - strand at 668.703 kb on - strand at 669.349 kb on + strand, within Rru_A0566 at 669.349 kb on + strand, within Rru_A0566 at 669.350 kb on - strand, within Rru_A0566 at 669.361 kb on + strand, within Rru_A0566 at 669.361 kb on + strand, within Rru_A0566 at 669.361 kb on + strand, within Rru_A0566
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 667,353 - Rru_A0564 0.28 +0.0 667,497 + Rru_A0564 0.41 -1.0 667,497 + Rru_A0564 0.41 -4.9 667,497 + Rru_A0564 0.41 +1.7 667,498 - Rru_A0564 0.41 +0.0 667,498 - Rru_A0564 0.41 +0.0 667,498 - Rru_A0564 0.41 +3.0 667,498 - Rru_A0564 0.41 +0.0 667,498 - Rru_A0564 0.41 -0.4 667,869 + Rru_A0564 0.74 +1.2 667,940 + Rru_A0564 0.80 +1.6 668,234 + -4.2 668,234 + +0.8 668,234 + +0.0 668,234 + +1.3 668,234 + +1.3 668,235 - +0.0 668,235 - +2.0 668,256 + +2.8 668,257 - +2.6 668,703 - +2.0 668,703 - +1.6 669,349 + Rru_A0566 0.17 +2.8 669,349 + Rru_A0566 0.17 -0.0 669,350 - Rru_A0566 0.17 +1.7 669,361 + Rru_A0566 0.17 -6.0 669,361 + Rru_A0566 0.17 +3.2 669,361 + Rru_A0566 0.17 +1.4
Or see this region's nucleotide sequence