Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0560

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0559 and Rru_A0560 are separated by 183 nucleotidesRru_A0560 and Rru_A0561 overlap by 11 nucleotides Rru_A0559: Rru_A0559 - Alpha/beta hydrolase fold (NCBI), at 661,200 to 662,003 _A0559 Rru_A0560: Rru_A0560 - Cytochrome bd ubiquinol oxidase, subunit I (NCBI), at 662,187 to 663,617 _A0560 Rru_A0561: Rru_A0561 - Cytochrome bd ubiquinol oxidase, subunit II (NCBI), at 663,607 to 664,608 _A0561 Position (kb) 662 663 664Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 661.430 kb on + strand, within Rru_A0559at 661.430 kb on + strand, within Rru_A0559at 661.430 kb on + strand, within Rru_A0559at 661.430 kb on + strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.474 kb on + strand, within Rru_A0559at 661.475 kb on - strand, within Rru_A0559at 662.058 kb on + strandat 662.058 kb on + strandat 662.059 kb on - strandat 662.150 kb on + strandat 662.150 kb on + strandat 662.151 kb on - strandat 662.151 kb on - strandat 662.154 kb on + strandat 662.154 kb on + strandat 662.155 kb on - strandat 662.155 kb on - strandat 662.293 kb on - strandat 662.352 kb on + strand, within Rru_A0560at 662.352 kb on + strand, within Rru_A0560at 662.352 kb on + strand, within Rru_A0560at 662.353 kb on - strand, within Rru_A0560at 662.353 kb on - strand, within Rru_A0560at 662.353 kb on - strand, within Rru_A0560at 662.353 kb on - strand, within Rru_A0560at 662.354 kb on + strand, within Rru_A0560at 662.354 kb on + strand, within Rru_A0560at 662.354 kb on + strand, within Rru_A0560at 662.354 kb on + strand, within Rru_A0560at 662.421 kb on + strand, within Rru_A0560at 662.421 kb on + strand, within Rru_A0560at 662.422 kb on - strand, within Rru_A0560at 662.422 kb on - strand, within Rru_A0560at 662.422 kb on - strand, within Rru_A0560at 662.422 kb on - strand, within Rru_A0560at 662.490 kb on + strand, within Rru_A0560at 662.490 kb on + strand, within Rru_A0560at 662.490 kb on + strand, within Rru_A0560at 662.490 kb on + strand, within Rru_A0560at 662.491 kb on - strand, within Rru_A0560at 662.491 kb on - strand, within Rru_A0560at 662.654 kb on + strand, within Rru_A0560at 662.654 kb on + strand, within Rru_A0560at 662.655 kb on - strand, within Rru_A0560at 662.669 kb on + strand, within Rru_A0560at 662.750 kb on + strand, within Rru_A0560at 662.750 kb on + strand, within Rru_A0560at 662.766 kb on + strand, within Rru_A0560at 662.767 kb on - strand, within Rru_A0560at 663.090 kb on + strand, within Rru_A0560at 663.277 kb on - strand, within Rru_A0560at 663.294 kb on + strand, within Rru_A0560at 663.387 kb on + strand, within Rru_A0560at 663.401 kb on + strand, within Rru_A0560at 663.401 kb on + strand, within Rru_A0560at 663.401 kb on + strand, within Rru_A0560at 663.402 kb on - strand, within Rru_A0560at 663.402 kb on - strand, within Rru_A0560at 663.410 kb on + strand, within Rru_A0560at 663.472 kb on - strand, within Rru_A0560at 663.664 kb on + strandat 663.664 kb on + strandat 663.664 kb on + strandat 663.664 kb on + strandat 663.665 kb on - strandat 663.665 kb on - strandat 663.665 kb on - strandat 663.665 kb on - strandat 663.735 kb on + strand, within Rru_A0561at 663.736 kb on - strand, within Rru_A0561at 663.832 kb on + strand, within Rru_A0561at 663.832 kb on + strand, within Rru_A0561at 663.832 kb on + strand, within Rru_A0561at 663.856 kb on + strand, within Rru_A0561at 663.856 kb on + strand, within Rru_A0561at 663.856 kb on + strand, within Rru_A0561at 663.857 kb on - strand, within Rru_A0561at 663.857 kb on - strand, within Rru_A0561at 663.857 kb on - strand, within Rru_A0561at 663.857 kb on - strand, within Rru_A0561at 664.114 kb on + strand, within Rru_A0561at 664.116 kb on + strand, within Rru_A0561at 664.116 kb on + strand, within Rru_A0561at 664.116 kb on + strand, within Rru_A0561at 664.117 kb on - strand, within Rru_A0561at 664.117 kb on - strand, within Rru_A0561at 664.411 kb on + strand, within Rru_A0561at 664.411 kb on + strand, within Rru_A0561at 664.412 kb on - strand, within Rru_A0561at 664.412 kb on - strand, within Rru_A0561at 664.435 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.442 kb on - strand, within Rru_A0561at 664.442 kb on - strand, within Rru_A0561at 664.442 kb on - strand, within Rru_A0561at 664.442 kb on - strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.444 kb on - strand, within Rru_A0561at 664.546 kb on + strandat 664.555 kb on + strandat 664.561 kb on + strandat 664.561 kb on + strandat 664.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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661,430 + Rru_A0559 0.29 +0.0
661,430 + Rru_A0559 0.29 +3.1
661,430 + Rru_A0559 0.29 +0.0
661,430 + Rru_A0559 0.29 -0.0
661,431 - Rru_A0559 0.29 +0.0
661,431 - Rru_A0559 0.29 +0.6
661,431 - Rru_A0559 0.29 +2.2
661,431 - Rru_A0559 0.29 +1.3
661,431 - Rru_A0559 0.29 +1.3
661,474 + Rru_A0559 0.34 +2.4
661,475 - Rru_A0559 0.34 +2.6
662,058 + +0.0
662,058 + +0.0
662,059 - +1.4
662,150 + +0.0
662,150 + +0.0
662,151 - +0.0
662,151 - -0.7
662,154 + +0.5
662,154 + -0.2
662,155 - +0.0
662,155 - +0.0
662,293 - +3.6
662,352 + Rru_A0560 0.12 +0.0
662,352 + Rru_A0560 0.12 +0.0
662,352 + Rru_A0560 0.12 +1.1
662,353 - Rru_A0560 0.12 -5.4
662,353 - Rru_A0560 0.12 +0.0
662,353 - Rru_A0560 0.12 +0.0
662,353 - Rru_A0560 0.12 +0.0
662,354 + Rru_A0560 0.12 +0.0
662,354 + Rru_A0560 0.12 +0.4
662,354 + Rru_A0560 0.12 -3.3
662,354 + Rru_A0560 0.12 +1.6
662,421 + Rru_A0560 0.16 -1.0
662,421 + Rru_A0560 0.16 +0.0
662,422 - Rru_A0560 0.16 +0.0
662,422 - Rru_A0560 0.16 +0.0
662,422 - Rru_A0560 0.16 +0.2
662,422 - Rru_A0560 0.16 +0.0
662,490 + Rru_A0560 0.21 +0.0
662,490 + Rru_A0560 0.21 +0.0
662,490 + Rru_A0560 0.21 -2.8
662,490 + Rru_A0560 0.21 +1.7
662,491 - Rru_A0560 0.21 -2.6
662,491 - Rru_A0560 0.21 +0.0
662,654 + Rru_A0560 0.33 +0.0
662,654 + Rru_A0560 0.33 -3.0
662,655 - Rru_A0560 0.33 +0.0
662,669 + Rru_A0560 0.34 +0.0
662,750 + Rru_A0560 0.39 +0.0
662,750 + Rru_A0560 0.39 +0.0
662,766 + Rru_A0560 0.40 +0.0
662,767 - Rru_A0560 0.41 +0.0
663,090 + Rru_A0560 0.63 +0.0
663,277 - Rru_A0560 0.76 -1.6
663,294 + Rru_A0560 0.77 +0.0
663,387 + Rru_A0560 0.84 -1.6
663,401 + Rru_A0560 0.85 +0.0
663,401 + Rru_A0560 0.85 +0.0
663,401 + Rru_A0560 0.85 +0.0
663,402 - Rru_A0560 0.85 -1.0
663,402 - Rru_A0560 0.85 +0.0
663,410 + Rru_A0560 0.85 -1.6
663,472 - Rru_A0560 0.90 +2.4
663,664 + +0.0
663,664 + +0.6
663,664 + -2.3
663,664 + -1.0
663,665 - -1.0
663,665 - +0.0
663,665 - +0.0
663,665 - +0.0
663,735 + Rru_A0561 0.13 +0.0
663,736 - Rru_A0561 0.13 +2.2
663,832 + Rru_A0561 0.22 -1.0
663,832 + Rru_A0561 0.22 +0.5
663,832 + Rru_A0561 0.22 +0.0
663,856 + Rru_A0561 0.25 +0.9
663,856 + Rru_A0561 0.25 +0.8
663,856 + Rru_A0561 0.25 +0.0
663,857 - Rru_A0561 0.25 +1.4
663,857 - Rru_A0561 0.25 +0.0
663,857 - Rru_A0561 0.25 +0.0
663,857 - Rru_A0561 0.25 +0.0
664,114 + Rru_A0561 0.51 -1.0
664,116 + Rru_A0561 0.51 +0.0
664,116 + Rru_A0561 0.51 +0.0
664,116 + Rru_A0561 0.51 +0.0
664,117 - Rru_A0561 0.51 +0.0
664,117 - Rru_A0561 0.51 +0.9
664,411 + Rru_A0561 0.80 +0.0
664,411 + Rru_A0561 0.80 +1.7
664,412 - Rru_A0561 0.80 +0.0
664,412 - Rru_A0561 0.80 +2.0
664,435 + Rru_A0561 0.83 +1.9
664,441 + Rru_A0561 0.83 +0.0
664,441 + Rru_A0561 0.83 -1.6
664,441 + Rru_A0561 0.83 +1.0
664,441 + Rru_A0561 0.83 +0.0
664,441 + Rru_A0561 0.83 +3.3
664,441 + Rru_A0561 0.83 +0.0
664,441 + Rru_A0561 0.83 +2.8
664,441 + Rru_A0561 0.83 +0.2
664,442 - Rru_A0561 0.83 -1.0
664,442 - Rru_A0561 0.83 +0.0
664,442 - Rru_A0561 0.83 +0.0
664,442 - Rru_A0561 0.83 +1.3
664,443 + Rru_A0561 0.83 -5.7
664,443 + Rru_A0561 0.83 -1.0
664,443 + Rru_A0561 0.83 -4.2
664,443 + Rru_A0561 0.83 -2.0
664,443 + Rru_A0561 0.83 -2.7
664,443 + Rru_A0561 0.83 +0.0
664,444 - Rru_A0561 0.84 +2.2
664,546 + -1.7
664,555 + +0.4
664,561 + -1.7
664,561 + +0.0
664,561 + +0.0

Or see this region's nucleotide sequence