Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0516 and Rru_A0517 overlap by 4 nucleotides Rru_A0517 and Rru_A0518 are separated by 66 nucleotides Rru_A0518 and Rru_A0519 are separated by 47 nucleotides Rru_A0519 and Rru_A0520 are separated by 183 nucleotides
Rru_A0516: Rru_A0516 - GCN5-related N-acetyltransferase (NCBI), at 610,407 to 610,919
_A0516
Rru_A0517: Rru_A0517 - NAD(+) kinase (NCBI), at 610,916 to 611,725
_A0517
Rru_A0518: Rru_A0518 - molybdenum cofactor biosynthesis protein (NCBI), at 611,792 to 612,889
_A0518
Rru_A0519: Rru_A0519 - hypothetical protein (NCBI), at 612,937 to 613,125
_A0519
Rru_A0520: Rru_A0520 - hypothetical protein (NCBI), at 613,309 to 613,983
_A0520
Position (kb) 611
612
613 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 610.792 kb on - strand, within Rru_A0516 at 611.726 kb on + strand at 611.726 kb on + strand at 611.726 kb on + strand at 611.726 kb on + strand at 611.726 kb on + strand at 611.727 kb on - strand at 611.727 kb on - strand at 611.727 kb on - strand at 611.727 kb on - strand at 611.727 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.979 kb on + strand, within Rru_A0518 at 611.979 kb on + strand, within Rru_A0518 at 611.979 kb on + strand, within Rru_A0518 at 611.979 kb on + strand, within Rru_A0518 at 611.979 kb on + strand, within Rru_A0518 at 611.980 kb on - strand, within Rru_A0518 at 611.980 kb on - strand, within Rru_A0518 at 611.980 kb on - strand, within Rru_A0518 at 611.980 kb on - strand, within Rru_A0518 at 611.980 kb on - strand, within Rru_A0518 at 612.031 kb on + strand, within Rru_A0518 at 612.087 kb on + strand, within Rru_A0518 at 612.087 kb on + strand, within Rru_A0518 at 612.174 kb on + strand, within Rru_A0518 at 612.174 kb on + strand, within Rru_A0518 at 612.174 kb on + strand, within Rru_A0518 at 612.174 kb on + strand, within Rru_A0518 at 612.174 kb on + strand, within Rru_A0518 at 612.174 kb on + strand, within Rru_A0518 at 612.174 kb on + strand, within Rru_A0518 at 612.175 kb on - strand, within Rru_A0518 at 612.175 kb on - strand, within Rru_A0518 at 612.237 kb on + strand, within Rru_A0518 at 612.238 kb on - strand, within Rru_A0518 at 612.238 kb on - strand, within Rru_A0518 at 612.415 kb on + strand, within Rru_A0518 at 612.416 kb on - strand, within Rru_A0518 at 612.416 kb on - strand, within Rru_A0518 at 612.416 kb on - strand, within Rru_A0518 at 612.717 kb on + strand, within Rru_A0518 at 612.718 kb on - strand, within Rru_A0518 at 612.718 kb on - strand, within Rru_A0518 at 612.762 kb on + strand, within Rru_A0518 at 612.762 kb on + strand, within Rru_A0518 at 612.762 kb on + strand, within Rru_A0518 at 612.762 kb on + strand, within Rru_A0518 at 612.763 kb on - strand, within Rru_A0518 at 612.915 kb on + strand at 612.915 kb on + strand at 612.916 kb on - strand at 612.916 kb on - strand at 613.140 kb on - strand at 613.203 kb on - strand at 613.208 kb on + strand at 613.208 kb on + strand at 613.208 kb on + strand at 613.209 kb on - strand at 613.412 kb on + strand, within Rru_A0520 at 613.412 kb on + strand, within Rru_A0520 at 613.412 kb on + strand, within Rru_A0520 at 613.412 kb on + strand, within Rru_A0520 at 613.412 kb on + strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.413 kb on - strand, within Rru_A0520 at 613.416 kb on + strand, within Rru_A0520 at 613.416 kb on + strand, within Rru_A0520 at 613.416 kb on + strand, within Rru_A0520 at 613.416 kb on + strand, within Rru_A0520 at 613.416 kb on + strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.417 kb on - strand, within Rru_A0520 at 613.424 kb on + strand, within Rru_A0520 at 613.424 kb on + strand, within Rru_A0520
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 610,792 - Rru_A0516 0.75 +0.2 611,726 + +0.8 611,726 + -1.8 611,726 + -2.7 611,726 + +0.0 611,726 + -1.0 611,727 - +0.4 611,727 - +2.4 611,727 - +0.0 611,727 - -1.6 611,727 - +2.4 611,729 - +0.0 611,729 - +2.2 611,729 - +0.0 611,729 - +2.8 611,729 - +0.0 611,729 - +0.0 611,979 + Rru_A0518 0.17 +0.1 611,979 + Rru_A0518 0.17 +2.9 611,979 + Rru_A0518 0.17 +0.0 611,979 + Rru_A0518 0.17 +2.7 611,979 + Rru_A0518 0.17 +1.9 611,980 - Rru_A0518 0.17 +2.8 611,980 - Rru_A0518 0.17 +0.3 611,980 - Rru_A0518 0.17 +2.8 611,980 - Rru_A0518 0.17 -1.8 611,980 - Rru_A0518 0.17 -1.5 612,031 + Rru_A0518 0.22 +3.2 612,087 + Rru_A0518 0.27 +1.2 612,087 + Rru_A0518 0.27 +0.0 612,174 + Rru_A0518 0.35 +1.5 612,174 + Rru_A0518 0.35 +0.0 612,174 + Rru_A0518 0.35 +1.5 612,174 + Rru_A0518 0.35 +0.8 612,174 + Rru_A0518 0.35 -5.2 612,174 + Rru_A0518 0.35 +2.9 612,174 + Rru_A0518 0.35 +2.5 612,175 - Rru_A0518 0.35 +2.1 612,175 - Rru_A0518 0.35 +0.0 612,237 + Rru_A0518 0.41 +1.6 612,238 - Rru_A0518 0.41 +1.9 612,238 - Rru_A0518 0.41 +0.0 612,415 + Rru_A0518 0.57 +1.0 612,416 - Rru_A0518 0.57 +0.0 612,416 - Rru_A0518 0.57 +2.2 612,416 - Rru_A0518 0.57 +2.8 612,717 + Rru_A0518 0.84 -1.4 612,718 - Rru_A0518 0.84 +0.0 612,718 - Rru_A0518 0.84 +1.2 612,762 + Rru_A0518 0.88 +2.4 612,762 + Rru_A0518 0.88 +0.0 612,762 + Rru_A0518 0.88 +0.0 612,762 + Rru_A0518 0.88 -2.0 612,763 - Rru_A0518 0.88 +2.4 612,915 + +0.0 612,915 + +1.5 612,916 - +2.5 612,916 - +0.2 613,140 - +0.0 613,203 - +2.2 613,208 + +1.0 613,208 + +0.2 613,208 + +0.0 613,209 - +0.0 613,412 + Rru_A0520 0.15 +0.0 613,412 + Rru_A0520 0.15 +0.8 613,412 + Rru_A0520 0.15 -1.0 613,412 + Rru_A0520 0.15 +0.0 613,412 + Rru_A0520 0.15 +1.2 613,413 - Rru_A0520 0.15 -0.6 613,413 - Rru_A0520 0.15 +3.8 613,413 - Rru_A0520 0.15 -1.9 613,413 - Rru_A0520 0.15 +0.0 613,413 - Rru_A0520 0.15 -2.1 613,413 - Rru_A0520 0.15 +2.1 613,413 - Rru_A0520 0.15 +0.0 613,413 - Rru_A0520 0.15 +1.3 613,413 - Rru_A0520 0.15 +0.0 613,413 - Rru_A0520 0.15 -0.3 613,413 - Rru_A0520 0.15 +1.8 613,413 - Rru_A0520 0.15 +0.0 613,416 + Rru_A0520 0.16 -1.5 613,416 + Rru_A0520 0.16 +1.6 613,416 + Rru_A0520 0.16 +1.5 613,416 + Rru_A0520 0.16 +0.9 613,416 + Rru_A0520 0.16 -1.5 613,417 - Rru_A0520 0.16 -2.3 613,417 - Rru_A0520 0.16 -0.5 613,417 - Rru_A0520 0.16 -1.0 613,417 - Rru_A0520 0.16 -1.5 613,417 - Rru_A0520 0.16 +2.6 613,417 - Rru_A0520 0.16 +1.4 613,417 - Rru_A0520 0.16 +2.0 613,417 - Rru_A0520 0.16 +0.2 613,417 - Rru_A0520 0.16 +1.7 613,424 + Rru_A0520 0.17 -5.7 613,424 + Rru_A0520 0.17 -2.5
Or see this region's nucleotide sequence