Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0507

Experiment: Succinic Acid; Light intensity 18 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0506 and Rru_A0507 overlap by 4 nucleotidesRru_A0507 and Rru_A0508 are separated by 106 nucleotides Rru_A0506: Rru_A0506 - Glycoside hydrolase (NCBI), at 597,429 to 599,249 _A0506 Rru_A0507: Rru_A0507 - Alpha amylase, catalytic region (NCBI), at 599,246 to 602,065 _A0507 Rru_A0508: Rru_A0508 - Aminotransferase, class IV (NCBI), at 602,172 to 603,056 _A0508 Position (kb) 599 600 601 602 603Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 598.378 kb on - strand, within Rru_A0506at 598.400 kb on + strand, within Rru_A0506at 598.400 kb on + strand, within Rru_A0506at 598.401 kb on - strand, within Rru_A0506at 598.446 kb on + strand, within Rru_A0506at 598.446 kb on + strand, within Rru_A0506at 598.447 kb on - strand, within Rru_A0506at 598.449 kb on + strand, within Rru_A0506at 598.450 kb on - strand, within Rru_A0506at 598.450 kb on - strand, within Rru_A0506at 598.512 kb on + strand, within Rru_A0506at 598.513 kb on - strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 599.262 kb on - strandat 599.262 kb on - strandat 599.279 kb on + strandat 599.280 kb on - strandat 599.280 kb on - strandat 599.336 kb on + strandat 599.336 kb on + strandat 599.336 kb on + strandat 599.366 kb on + strandat 599.411 kb on + strandat 599.411 kb on + strandat 599.412 kb on - strandat 599.412 kb on - strandat 599.554 kb on + strand, within Rru_A0507at 599.609 kb on + strand, within Rru_A0507at 599.609 kb on + strand, within Rru_A0507at 599.684 kb on + strand, within Rru_A0507at 599.685 kb on - strand, within Rru_A0507at 599.792 kb on + strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.801 kb on - strand, within Rru_A0507at 600.111 kb on - strand, within Rru_A0507at 600.269 kb on + strand, within Rru_A0507at 600.269 kb on + strand, within Rru_A0507at 600.269 kb on + strand, within Rru_A0507at 600.269 kb on + strand, within Rru_A0507at 600.270 kb on - strand, within Rru_A0507at 600.270 kb on - strand, within Rru_A0507at 600.270 kb on - strand, within Rru_A0507at 600.270 kb on - strand, within Rru_A0507at 600.344 kb on + strand, within Rru_A0507at 600.345 kb on - strand, within Rru_A0507at 600.345 kb on - strand, within Rru_A0507at 600.345 kb on - strand, within Rru_A0507at 600.701 kb on + strand, within Rru_A0507at 600.701 kb on + strand, within Rru_A0507at 600.702 kb on - strand, within Rru_A0507at 600.702 kb on - strand, within Rru_A0507at 600.702 kb on - strand, within Rru_A0507at 600.800 kb on + strand, within Rru_A0507at 600.800 kb on + strand, within Rru_A0507at 600.801 kb on - strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.899 kb on + strand, within Rru_A0507at 600.900 kb on - strand, within Rru_A0507at 600.900 kb on - strand, within Rru_A0507at 600.900 kb on - strand, within Rru_A0507at 600.900 kb on - strand, within Rru_A0507at 600.901 kb on + strand, within Rru_A0507at 600.901 kb on + strand, within Rru_A0507at 601.331 kb on + strand, within Rru_A0507at 601.331 kb on + strand, within Rru_A0507at 601.332 kb on - strand, within Rru_A0507at 601.332 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.367 kb on - strand, within Rru_A0507at 601.367 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.415 kb on + strand, within Rru_A0507at 601.416 kb on - strand, within Rru_A0507at 601.416 kb on - strand, within Rru_A0507at 601.525 kb on + strand, within Rru_A0507at 601.558 kb on + strand, within Rru_A0507at 601.563 kb on - strand, within Rru_A0507at 601.563 kb on - strand, within Rru_A0507at 601.934 kb on - strandat 602.063 kb on + strandat 602.064 kb on - strandat 602.104 kb on - strandat 602.174 kb on - strandat 602.203 kb on + strandat 602.228 kb on - strandat 602.284 kb on + strand, within Rru_A0508at 602.284 kb on + strand, within Rru_A0508at 602.284 kb on + strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.468 kb on + strand, within Rru_A0508at 602.468 kb on + strand, within Rru_A0508at 602.471 kb on - strand, within Rru_A0508at 602.471 kb on - strand, within Rru_A0508at 602.628 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.750 kb on - strand, within Rru_A0508at 602.771 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 603.010 kb on + strandat 603.010 kb on + strandat 603.011 kb on - strandat 603.012 kb on + strandat 603.013 kb on - strandat 603.013 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
remove
598,378 - Rru_A0506 0.52 +2.2
598,400 + Rru_A0506 0.53 +2.1
598,400 + Rru_A0506 0.53 +3.9
598,401 - Rru_A0506 0.53 +0.0
598,446 + Rru_A0506 0.56 +0.4
598,446 + Rru_A0506 0.56 +1.0
598,447 - Rru_A0506 0.56 -1.6
598,449 + Rru_A0506 0.56 +0.8
598,450 - Rru_A0506 0.56 +0.0
598,450 - Rru_A0506 0.56 +0.0
598,512 + Rru_A0506 0.59 +0.0
598,513 - Rru_A0506 0.60 +4.2
598,645 + Rru_A0506 0.67 -0.4
598,645 + Rru_A0506 0.67 +0.0
598,645 + Rru_A0506 0.67 -5.2
598,646 - Rru_A0506 0.67 +1.9
598,646 - Rru_A0506 0.67 +0.0
598,646 - Rru_A0506 0.67 -1.5
599,262 - +0.0
599,262 - +0.0
599,279 + +1.0
599,280 - +0.8
599,280 - +3.5
599,336 + +0.0
599,336 + -1.0
599,336 + -0.6
599,366 + +0.0
599,411 + +0.0
599,411 + +2.4
599,412 - +0.0
599,412 - +0.4
599,554 + Rru_A0507 0.11 -0.6
599,609 + Rru_A0507 0.13 +2.6
599,609 + Rru_A0507 0.13 +1.8
599,684 + Rru_A0507 0.16 +0.0
599,685 - Rru_A0507 0.16 +2.1
599,792 + Rru_A0507 0.19 +1.6
599,793 - Rru_A0507 0.19 +2.6
599,793 - Rru_A0507 0.19 +1.8
599,793 - Rru_A0507 0.19 +1.5
599,800 + Rru_A0507 0.20 +3.0
599,800 + Rru_A0507 0.20 +1.0
599,800 + Rru_A0507 0.20 +2.3
599,801 - Rru_A0507 0.20 +2.7
600,111 - Rru_A0507 0.31 +0.0
600,269 + Rru_A0507 0.36 +2.1
600,269 + Rru_A0507 0.36 -1.0
600,269 + Rru_A0507 0.36 +2.4
600,269 + Rru_A0507 0.36 -1.0
600,270 - Rru_A0507 0.36 +1.7
600,270 - Rru_A0507 0.36 -1.0
600,270 - Rru_A0507 0.36 -2.6
600,270 - Rru_A0507 0.36 +0.0
600,344 + Rru_A0507 0.39 -0.9
600,345 - Rru_A0507 0.39 +1.0
600,345 - Rru_A0507 0.39 -4.1
600,345 - Rru_A0507 0.39 -1.0
600,701 + Rru_A0507 0.52 +2.2
600,701 + Rru_A0507 0.52 +0.8
600,702 - Rru_A0507 0.52 -4.3
600,702 - Rru_A0507 0.52 +2.1
600,702 - Rru_A0507 0.52 +1.4
600,800 + Rru_A0507 0.55 +3.4
600,800 + Rru_A0507 0.55 -4.6
600,801 - Rru_A0507 0.55 +1.7
600,899 + Rru_A0507 0.59 +2.6
600,899 + Rru_A0507 0.59 -1.8
600,899 + Rru_A0507 0.59 +2.2
600,899 + Rru_A0507 0.59 -1.7
600,899 + Rru_A0507 0.59 +1.2
600,899 + Rru_A0507 0.59 +0.0
600,899 + Rru_A0507 0.59 +2.2
600,900 - Rru_A0507 0.59 +2.5
600,900 - Rru_A0507 0.59 +1.4
600,900 - Rru_A0507 0.59 -2.0
600,900 - Rru_A0507 0.59 +2.4
600,901 + Rru_A0507 0.59 +1.4
600,901 + Rru_A0507 0.59 +1.9
601,331 + Rru_A0507 0.74 +2.6
601,331 + Rru_A0507 0.74 +0.5
601,332 - Rru_A0507 0.74 +0.0
601,332 - Rru_A0507 0.74 +0.9
601,334 - Rru_A0507 0.74 +1.7
601,334 - Rru_A0507 0.74 +2.1
601,334 - Rru_A0507 0.74 +2.1
601,334 - Rru_A0507 0.74 +0.0
601,366 + Rru_A0507 0.75 +0.0
601,366 + Rru_A0507 0.75 +2.2
601,366 + Rru_A0507 0.75 -1.6
601,367 - Rru_A0507 0.75 +1.5
601,367 - Rru_A0507 0.75 +3.0
601,395 - Rru_A0507 0.76 +0.0
601,395 - Rru_A0507 0.76 +3.0
601,395 - Rru_A0507 0.76 +0.0
601,415 + Rru_A0507 0.77 -5.9
601,416 - Rru_A0507 0.77 +2.8
601,416 - Rru_A0507 0.77 +0.0
601,525 + Rru_A0507 0.81 +2.5
601,558 + Rru_A0507 0.82 +2.7
601,563 - Rru_A0507 0.82 -2.3
601,563 - Rru_A0507 0.82 +0.0
601,934 - +1.8
602,063 + +0.0
602,064 - +0.0
602,104 - +0.3
602,174 - +2.7
602,203 + +2.4
602,228 - -0.2
602,284 + Rru_A0508 0.13 +0.0
602,284 + Rru_A0508 0.13 +0.0
602,284 + Rru_A0508 0.13 +1.5
602,285 - Rru_A0508 0.13 +2.3
602,285 - Rru_A0508 0.13 +0.0
602,285 - Rru_A0508 0.13 +2.9
602,468 + Rru_A0508 0.33 -0.4
602,468 + Rru_A0508 0.33 -1.0
602,471 - Rru_A0508 0.34 +2.2
602,471 - Rru_A0508 0.34 -1.0
602,628 + Rru_A0508 0.52 +4.6
602,731 + Rru_A0508 0.63 +1.6
602,731 + Rru_A0508 0.63 +1.4
602,731 + Rru_A0508 0.63 +1.3
602,732 - Rru_A0508 0.63 +0.0
602,732 - Rru_A0508 0.63 +0.0
602,749 + Rru_A0508 0.65 +1.8
602,749 + Rru_A0508 0.65 -0.4
602,750 - Rru_A0508 0.65 +0.0
602,771 - Rru_A0508 0.68 +1.5
602,915 - Rru_A0508 0.84 +2.0
602,915 - Rru_A0508 0.84 +0.0
602,949 + Rru_A0508 0.88 -2.0
602,949 + Rru_A0508 0.88 +1.2
602,950 - Rru_A0508 0.88 +2.5
602,950 - Rru_A0508 0.88 +0.0
603,010 + +2.2
603,010 + -2.8
603,011 - -2.6
603,012 + -6.1
603,013 - +1.8
603,013 - +0.0

Or see this region's nucleotide sequence