Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0463

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0462 and Rru_A0463 are separated by 150 nucleotidesRru_A0463 and Rru_A0464 are separated by 57 nucleotidesRru_A0464 and Rru_A0465 are separated by 42 nucleotides Rru_A0462: Rru_A0462 - Aldehyde dehydrogenase (NCBI), at 541,668 to 543,248 _A0462 Rru_A0463: Rru_A0463 - Alanine racemase-like (NCBI), at 543,399 to 544,469 _A0463 Rru_A0464: Rru_A0464 - hypothetical protein (NCBI), at 544,527 to 545,348 _A0464 Rru_A0465: Rru_A0465 - Phosphoserine phosphatase SerB (NCBI), at 545,391 to 546,290 _A0465 Position (kb) 543 544 545Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 542.403 kb on + strand, within Rru_A0462at 542.403 kb on + strand, within Rru_A0462at 542.404 kb on - strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.406 kb on - strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.425 kb on - strand, within Rru_A0462at 542.425 kb on - strand, within Rru_A0462at 542.597 kb on + strand, within Rru_A0462at 543.175 kb on + strandat 543.175 kb on + strandat 543.176 kb on - strandat 543.299 kb on + strandat 543.300 kb on - strandat 543.455 kb on + strandat 543.458 kb on + strandat 543.459 kb on - strandat 543.512 kb on + strand, within Rru_A0463at 543.513 kb on - strand, within Rru_A0463at 543.513 kb on - strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.662 kb on + strand, within Rru_A0463at 543.663 kb on - strand, within Rru_A0463at 543.663 kb on - strand, within Rru_A0463at 543.918 kb on + strand, within Rru_A0463at 543.918 kb on + strand, within Rru_A0463at 543.919 kb on - strand, within Rru_A0463at 543.919 kb on - strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.091 kb on + strand, within Rru_A0463at 544.091 kb on + strand, within Rru_A0463at 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.512 kb on - strandat 544.746 kb on - strand, within Rru_A0464at 544.746 kb on - strand, within Rru_A0464at 544.793 kb on + strand, within Rru_A0464at 544.793 kb on + strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.157 kb on + strand, within Rru_A0464at 545.157 kb on + strand, within Rru_A0464at 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.392 kb on + strandat 545.392 kb on + strandat 545.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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542,403 + Rru_A0462 0.46 +2.0
542,403 + Rru_A0462 0.46 +1.0
542,404 - Rru_A0462 0.47 +1.4
542,405 + Rru_A0462 0.47 +0.0
542,405 + Rru_A0462 0.47 -1.8
542,405 + Rru_A0462 0.47 +1.4
542,406 - Rru_A0462 0.47 +0.0
542,424 + Rru_A0462 0.48 +0.0
542,424 + Rru_A0462 0.48 +0.0
542,424 + Rru_A0462 0.48 +0.0
542,425 - Rru_A0462 0.48 +0.0
542,425 - Rru_A0462 0.48 -1.0
542,597 + Rru_A0462 0.59 +0.6
543,175 + +0.2
543,175 + +0.5
543,176 - +1.4
543,299 + +0.0
543,300 - +0.0
543,455 + +0.0
543,458 + +2.3
543,459 - +0.8
543,512 + Rru_A0463 0.11 -1.7
543,513 - Rru_A0463 0.11 +1.7
543,513 - Rru_A0463 0.11 +0.0
543,660 + Rru_A0463 0.24 -1.1
543,660 + Rru_A0463 0.24 +1.1
543,660 + Rru_A0463 0.24 +0.2
543,660 + Rru_A0463 0.24 +0.0
543,660 + Rru_A0463 0.24 +1.8
543,660 + Rru_A0463 0.24 -1.0
543,660 + Rru_A0463 0.24 -2.1
543,660 + Rru_A0463 0.24 -4.2
543,661 - Rru_A0463 0.24 +1.4
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 +1.9
543,661 - Rru_A0463 0.24 -1.6
543,661 - Rru_A0463 0.24 -2.0
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 +1.9
543,661 - Rru_A0463 0.24 +0.0
543,661 - Rru_A0463 0.24 -0.9
543,661 - Rru_A0463 0.24 +1.4
543,661 - Rru_A0463 0.24 +0.3
543,662 + Rru_A0463 0.25 +0.0
543,663 - Rru_A0463 0.25 +0.0
543,663 - Rru_A0463 0.25 -2.3
543,918 + Rru_A0463 0.48 +0.0
543,918 + Rru_A0463 0.48 +2.5
543,919 - Rru_A0463 0.49 +0.0
543,919 - Rru_A0463 0.49 +1.9
544,083 + Rru_A0463 0.64 -2.5
544,083 + Rru_A0463 0.64 +0.0
544,083 + Rru_A0463 0.64 +0.8
544,084 - Rru_A0463 0.64 +2.3
544,084 - Rru_A0463 0.64 +0.0
544,084 - Rru_A0463 0.64 -1.6
544,084 - Rru_A0463 0.64 +0.0
544,089 + Rru_A0463 0.64 +1.6
544,089 + Rru_A0463 0.64 +0.0
544,089 + Rru_A0463 0.64 +3.2
544,089 + Rru_A0463 0.64 +1.5
544,089 + Rru_A0463 0.64 +2.0
544,089 + Rru_A0463 0.64 +0.0
544,090 - Rru_A0463 0.65 +1.7
544,090 - Rru_A0463 0.65 +0.5
544,090 - Rru_A0463 0.65 -0.2
544,090 - Rru_A0463 0.65 +0.0
544,090 - Rru_A0463 0.65 +2.4
544,090 - Rru_A0463 0.65 +0.7
544,090 - Rru_A0463 0.65 +2.3
544,091 + Rru_A0463 0.65 +0.0
544,091 + Rru_A0463 0.65 +2.2
544,402 + +1.2
544,402 + +1.7
544,402 + +0.8
544,402 + +0.0
544,402 + +1.3
544,403 - -1.0
544,403 - +2.2
544,403 - +2.2
544,403 - +2.8
544,403 - +1.5
544,512 - +0.0
544,746 - Rru_A0464 0.27 +0.0
544,746 - Rru_A0464 0.27 -1.0
544,793 + Rru_A0464 0.32 +3.2
544,793 + Rru_A0464 0.32 +1.0
544,794 - Rru_A0464 0.32 +0.0
544,794 - Rru_A0464 0.32 +1.3
544,794 - Rru_A0464 0.32 -1.0
545,058 + Rru_A0464 0.65 +1.6
545,058 + Rru_A0464 0.65 -2.0
545,058 + Rru_A0464 0.65 +1.6
545,058 + Rru_A0464 0.65 +0.8
545,059 - Rru_A0464 0.65 +0.0
545,059 - Rru_A0464 0.65 +0.7
545,059 - Rru_A0464 0.65 +1.7
545,059 - Rru_A0464 0.65 +0.0
545,059 - Rru_A0464 0.65 +1.5
545,059 - Rru_A0464 0.65 +0.0
545,157 + Rru_A0464 0.77 +1.5
545,157 + Rru_A0464 0.77 +0.0
545,334 + +2.1
545,334 + +0.8
545,334 + +0.4
545,334 + -1.0
545,334 + +1.5
545,335 - +0.0
545,335 - +0.4
545,335 - +0.0
545,335 - -3.4
545,335 - +1.8
545,392 + +2.3
545,392 + +0.0
545,393 - +2.3

Or see this region's nucleotide sequence