Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0439 and Rru_A0440 are separated by 16 nucleotides Rru_A0440 and Rru_A0441 are separated by 170 nucleotides
Rru_A0439: Rru_A0439 - extracellular solute-binding protein, family 3 (NCBI), at 516,351 to 517,445
_A0439
Rru_A0440: Rru_A0440 - Xylose isomerase-like TIM barrel (NCBI), at 517,462 to 518,433
_A0440
Rru_A0441: Rru_A0441 - chemotaxis sensory transducer (NCBI), at 518,604 to 520,565
_A0441
Position (kb) 517
518
519 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 516.497 kb on + strand, within Rru_A0439 at 516.497 kb on + strand, within Rru_A0439 at 516.498 kb on - strand, within Rru_A0439 at 516.519 kb on + strand, within Rru_A0439 at 516.933 kb on - strand, within Rru_A0439 at 516.933 kb on - strand, within Rru_A0439 at 516.935 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.189 kb on + strand, within Rru_A0439 at 517.332 kb on + strand, within Rru_A0439 at 517.333 kb on - strand, within Rru_A0439 at 517.443 kb on + strand at 517.444 kb on - strand at 517.463 kb on + strand at 517.463 kb on + strand at 517.463 kb on + strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.493 kb on + strand at 517.493 kb on + strand at 517.929 kb on + strand, within Rru_A0440 at 517.929 kb on + strand, within Rru_A0440 at 518.055 kb on + strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.383 kb on - strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.539 kb on - strand at 518.563 kb on + strand at 518.563 kb on + strand at 518.563 kb on + strand at 518.564 kb on - strand at 519.084 kb on + strand, within Rru_A0441 at 519.084 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.345 kb on + strand, within Rru_A0441 at 519.345 kb on + strand, within Rru_A0441 at 519.346 kb on - strand, within Rru_A0441
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 516,497 + Rru_A0439 0.13 +0.8 516,497 + Rru_A0439 0.13 -1.0 516,498 - Rru_A0439 0.13 +0.0 516,519 + Rru_A0439 0.15 +1.4 516,933 - Rru_A0439 0.53 -2.3 516,933 - Rru_A0439 0.53 +1.9 516,935 - Rru_A0439 0.53 +0.3 517,000 - Rru_A0439 0.59 +0.5 517,000 - Rru_A0439 0.59 +1.8 517,000 - Rru_A0439 0.59 +3.7 517,000 - Rru_A0439 0.59 +2.2 517,189 + Rru_A0439 0.77 +1.5 517,332 + Rru_A0439 0.90 +0.0 517,333 - Rru_A0439 0.90 +1.5 517,443 + +0.0 517,444 - +0.0 517,463 + +0.2 517,463 + -1.0 517,463 + +0.0 517,464 - -1.0 517,464 - +1.2 517,464 - +0.0 517,464 - -1.0 517,493 + +1.2 517,493 + +3.7 517,929 + Rru_A0440 0.48 -4.8 517,929 + Rru_A0440 0.48 +2.8 518,055 + Rru_A0440 0.61 +1.9 518,056 - Rru_A0440 0.61 +0.0 518,056 - Rru_A0440 0.61 +2.4 518,383 - +2.3 518,477 + +0.0 518,477 + +0.6 518,477 + -4.8 518,477 + +0.0 518,539 - +4.2 518,563 + +1.5 518,563 + +1.6 518,563 + +2.3 518,564 - +0.0 519,084 + Rru_A0441 0.24 +1.3 519,084 + Rru_A0441 0.24 +1.6 519,270 + Rru_A0441 0.34 +1.2 519,270 + Rru_A0441 0.34 +0.7 519,270 + Rru_A0441 0.34 +1.9 519,271 - Rru_A0441 0.34 -1.0 519,271 - Rru_A0441 0.34 -1.6 519,271 - Rru_A0441 0.34 +0.0 519,271 - Rru_A0441 0.34 +0.0 519,271 - Rru_A0441 0.34 +0.0 519,345 + Rru_A0441 0.38 +0.5 519,345 + Rru_A0441 0.38 +1.9 519,346 - Rru_A0441 0.38 +0.0
Or see this region's nucleotide sequence