Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0437 and Rru_A0438 are separated by 264 nucleotides Rru_A0438 and Rru_A0439 are separated by 212 nucleotides
Rru_A0437: Rru_A0437 - OmpA family protein (NCBI), at 512,107 to 513,129
_A0437
Rru_A0438: Rru_A0438 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 513,394 to 516,138
_A0438
Rru_A0439: Rru_A0439 - extracellular solute-binding protein, family 3 (NCBI), at 516,351 to 517,445
_A0439
Position (kb) 513
514
515
516
517 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 513.041 kb on + strand at 513.146 kb on - strand at 513.146 kb on - strand at 513.246 kb on + strand at 513.247 kb on - strand at 513.255 kb on - strand at 513.255 kb on - strand at 513.280 kb on - strand at 513.395 kb on + strand at 513.395 kb on + strand at 513.395 kb on + strand at 513.510 kb on + strand at 513.540 kb on + strand at 513.541 kb on - strand at 513.541 kb on - strand at 513.541 kb on - strand at 513.542 kb on + strand at 513.543 kb on - strand at 513.543 kb on - strand at 513.549 kb on + strand at 513.550 kb on - strand at 513.550 kb on - strand at 513.754 kb on - strand, within Rru_A0438 at 513.785 kb on + strand, within Rru_A0438 at 513.786 kb on - strand, within Rru_A0438 at 513.786 kb on - strand, within Rru_A0438 at 513.786 kb on - strand, within Rru_A0438 at 513.786 kb on - strand, within Rru_A0438 at 513.881 kb on + strand, within Rru_A0438 at 513.881 kb on + strand, within Rru_A0438 at 513.882 kb on - strand, within Rru_A0438 at 513.882 kb on - strand, within Rru_A0438 at 513.882 kb on - strand, within Rru_A0438 at 514.378 kb on + strand, within Rru_A0438 at 514.378 kb on + strand, within Rru_A0438 at 514.378 kb on + strand, within Rru_A0438 at 514.378 kb on + strand, within Rru_A0438 at 514.379 kb on - strand, within Rru_A0438 at 514.379 kb on - strand, within Rru_A0438 at 514.379 kb on - strand, within Rru_A0438 at 514.379 kb on - strand, within Rru_A0438 at 514.379 kb on - strand, within Rru_A0438 at 514.379 kb on - strand, within Rru_A0438 at 514.385 kb on + strand, within Rru_A0438 at 514.385 kb on + strand, within Rru_A0438 at 514.385 kb on + strand, within Rru_A0438 at 514.385 kb on + strand, within Rru_A0438 at 514.386 kb on - strand, within Rru_A0438 at 514.386 kb on - strand, within Rru_A0438 at 514.386 kb on - strand, within Rru_A0438 at 514.386 kb on - strand, within Rru_A0438 at 514.436 kb on + strand, within Rru_A0438 at 514.436 kb on + strand, within Rru_A0438 at 514.436 kb on + strand, within Rru_A0438 at 514.436 kb on + strand, within Rru_A0438 at 514.436 kb on + strand, within Rru_A0438 at 514.437 kb on - strand, within Rru_A0438 at 514.973 kb on + strand, within Rru_A0438 at 514.973 kb on + strand, within Rru_A0438 at 514.974 kb on - strand, within Rru_A0438 at 515.303 kb on + strand, within Rru_A0438 at 515.330 kb on + strand, within Rru_A0438 at 515.330 kb on + strand, within Rru_A0438 at 515.331 kb on - strand, within Rru_A0438 at 515.331 kb on - strand, within Rru_A0438 at 515.853 kb on + strand, within Rru_A0438 at 515.854 kb on - strand, within Rru_A0438 at 516.214 kb on + strand at 516.214 kb on + strand at 516.214 kb on + strand at 516.214 kb on + strand at 516.215 kb on - strand at 516.215 kb on - strand at 516.306 kb on - strand at 516.306 kb on - strand at 516.306 kb on - strand at 516.497 kb on + strand, within Rru_A0439 at 516.497 kb on + strand, within Rru_A0439 at 516.498 kb on - strand, within Rru_A0439 at 516.519 kb on + strand, within Rru_A0439 at 516.933 kb on - strand, within Rru_A0439 at 516.933 kb on - strand, within Rru_A0439 at 516.935 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 513,041 + +0.0 513,146 - -0.2 513,146 - +0.0 513,246 + +0.0 513,247 - +2.8 513,255 - +0.0 513,255 - +0.0 513,280 - +0.0 513,395 + +0.0 513,395 + +0.0 513,395 + +0.0 513,510 + +3.1 513,540 + -0.6 513,541 - +1.2 513,541 - +1.3 513,541 - +0.0 513,542 + +2.2 513,543 - +2.8 513,543 - +0.0 513,549 + +0.0 513,550 - +2.1 513,550 - +0.3 513,754 - Rru_A0438 0.13 +1.5 513,785 + Rru_A0438 0.14 +1.2 513,786 - Rru_A0438 0.14 +0.0 513,786 - Rru_A0438 0.14 +2.3 513,786 - Rru_A0438 0.14 +0.0 513,786 - Rru_A0438 0.14 +0.0 513,881 + Rru_A0438 0.18 -5.2 513,881 + Rru_A0438 0.18 +0.5 513,882 - Rru_A0438 0.18 -1.0 513,882 - Rru_A0438 0.18 +0.0 513,882 - Rru_A0438 0.18 +0.0 514,378 + Rru_A0438 0.36 +2.3 514,378 + Rru_A0438 0.36 +2.1 514,378 + Rru_A0438 0.36 +0.0 514,378 + Rru_A0438 0.36 +0.0 514,379 - Rru_A0438 0.36 +1.8 514,379 - Rru_A0438 0.36 +0.0 514,379 - Rru_A0438 0.36 +1.0 514,379 - Rru_A0438 0.36 +1.6 514,379 - Rru_A0438 0.36 +1.7 514,379 - Rru_A0438 0.36 +0.0 514,385 + Rru_A0438 0.36 +1.9 514,385 + Rru_A0438 0.36 +0.0 514,385 + Rru_A0438 0.36 +2.4 514,385 + Rru_A0438 0.36 +1.7 514,386 - Rru_A0438 0.36 +1.2 514,386 - Rru_A0438 0.36 +0.0 514,386 - Rru_A0438 0.36 +0.0 514,386 - Rru_A0438 0.36 -5.8 514,436 + Rru_A0438 0.38 +2.3 514,436 + Rru_A0438 0.38 +0.0 514,436 + Rru_A0438 0.38 +1.8 514,436 + Rru_A0438 0.38 +0.0 514,436 + Rru_A0438 0.38 +0.0 514,437 - Rru_A0438 0.38 -1.6 514,973 + Rru_A0438 0.58 +0.0 514,973 + Rru_A0438 0.58 +0.7 514,974 - Rru_A0438 0.58 +0.0 515,303 + Rru_A0438 0.70 -0.1 515,330 + Rru_A0438 0.71 -1.0 515,330 + Rru_A0438 0.71 +1.6 515,331 - Rru_A0438 0.71 +1.9 515,331 - Rru_A0438 0.71 +2.2 515,853 + Rru_A0438 0.90 +3.1 515,854 - Rru_A0438 0.90 +0.0 516,214 + +0.0 516,214 + +2.6 516,214 + +1.6 516,214 + +0.0 516,215 - +2.7 516,215 - +0.0 516,306 - +0.0 516,306 - +0.0 516,306 - +0.0 516,497 + Rru_A0439 0.13 +0.8 516,497 + Rru_A0439 0.13 -1.0 516,498 - Rru_A0439 0.13 +0.0 516,519 + Rru_A0439 0.15 +1.4 516,933 - Rru_A0439 0.53 -2.3 516,933 - Rru_A0439 0.53 +1.9 516,935 - Rru_A0439 0.53 +0.3 517,000 - Rru_A0439 0.59 +0.5 517,000 - Rru_A0439 0.59 +1.8 517,000 - Rru_A0439 0.59 +3.7 517,000 - Rru_A0439 0.59 +2.2
Or see this region's nucleotide sequence