Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0321

Experiment: Succinic Acid; Light intensity 18 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0320 and Rru_A0321 are separated by 19 nucleotidesRru_A0321 and Rru_A0322 are separated by 9 nucleotidesRru_A0322 and Rru_A0323 are separated by 37 nucleotides Rru_A0320: Rru_A0320 - NADH dehydrogenase (quinone) (NCBI), at 389,490 to 391,085 _A0320 Rru_A0321: Rru_A0321 - NADH dehydrogenase (ubiquinone), 20 kDa subunit (NCBI), at 391,105 to 391,626 _A0321 Rru_A0322: Rru_A0322 - Peptidase M52, hydrogen uptake protein (NCBI), at 391,636 to 392,100 _A0322 Rru_A0323: Rru_A0323 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 392,138 to 392,668 _A0323 Position (kb) 391 392Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 390.306 kb on + strand, within Rru_A0320at 390.306 kb on + strand, within Rru_A0320at 390.306 kb on + strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.418 kb on - strand, within Rru_A0320at 390.418 kb on - strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.442 kb on - strand, within Rru_A0320at 390.443 kb on + strand, within Rru_A0320at 390.443 kb on + strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.471 kb on + strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320at 390.483 kb on + strand, within Rru_A0320at 390.496 kb on - strand, within Rru_A0320at 390.521 kb on + strand, within Rru_A0320at 390.521 kb on + strand, within Rru_A0320at 390.522 kb on - strand, within Rru_A0320at 390.522 kb on - strand, within Rru_A0320at 390.558 kb on + strand, within Rru_A0320at 390.558 kb on + strand, within Rru_A0320at 390.559 kb on - strand, within Rru_A0320at 390.559 kb on - strand, within Rru_A0320at 390.696 kb on + strand, within Rru_A0320at 390.696 kb on + strand, within Rru_A0320at 390.696 kb on + strand, within Rru_A0320at 390.696 kb on + strand, within Rru_A0320at 390.790 kb on - strand, within Rru_A0320at 391.084 kb on - strandat 391.114 kb on + strandat 391.115 kb on - strandat 391.222 kb on + strand, within Rru_A0321at 391.223 kb on - strand, within Rru_A0321at 391.223 kb on - strand, within Rru_A0321at 391.225 kb on + strand, within Rru_A0321at 391.225 kb on + strand, within Rru_A0321at 391.226 kb on - strand, within Rru_A0321at 391.226 kb on - strand, within Rru_A0321at 391.336 kb on + strand, within Rru_A0321at 391.337 kb on - strand, within Rru_A0321at 391.414 kb on + strand, within Rru_A0321at 391.414 kb on + strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.791 kb on - strand, within Rru_A0322at 391.791 kb on - strand, within Rru_A0322at 391.801 kb on + strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.960 kb on + strand, within Rru_A0322at 391.961 kb on - strand, within Rru_A0322at 391.961 kb on - strand, within Rru_A0322at 392.078 kb on + strandat 392.078 kb on + strandat 392.079 kb on - strandat 392.079 kb on - strandat 392.079 kb on - strandat 392.370 kb on - strand, within Rru_A0323at 392.512 kb on + strand, within Rru_A0323at 392.513 kb on - strand, within Rru_A0323at 392.555 kb on - strand, within Rru_A0323

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
remove
390,306 + Rru_A0320 0.51 +0.0
390,306 + Rru_A0320 0.51 +0.0
390,306 + Rru_A0320 0.51 +0.0
390,307 - Rru_A0320 0.51 +1.4
390,307 - Rru_A0320 0.51 -1.0
390,307 - Rru_A0320 0.51 -1.0
390,418 - Rru_A0320 0.58 +0.0
390,418 - Rru_A0320 0.58 +0.0
390,441 + Rru_A0320 0.60 +0.0
390,441 + Rru_A0320 0.60 -0.4
390,441 + Rru_A0320 0.60 -0.4
390,441 + Rru_A0320 0.60 -0.2
390,442 - Rru_A0320 0.60 +0.0
390,443 + Rru_A0320 0.60 +0.0
390,443 + Rru_A0320 0.60 +2.7
390,444 - Rru_A0320 0.60 +2.9
390,444 - Rru_A0320 0.60 -1.9
390,444 - Rru_A0320 0.60 +2.5
390,471 + Rru_A0320 0.61 +0.0
390,472 - Rru_A0320 0.62 -0.5
390,472 - Rru_A0320 0.62 +1.7
390,472 - Rru_A0320 0.62 +1.6
390,483 + Rru_A0320 0.62 -2.9
390,496 - Rru_A0320 0.63 -1.4
390,521 + Rru_A0320 0.65 +0.9
390,521 + Rru_A0320 0.65 +0.0
390,522 - Rru_A0320 0.65 +1.9
390,522 - Rru_A0320 0.65 +1.9
390,558 + Rru_A0320 0.67 +2.0
390,558 + Rru_A0320 0.67 +1.4
390,559 - Rru_A0320 0.67 +2.1
390,559 - Rru_A0320 0.67 +0.0
390,696 + Rru_A0320 0.76 +0.0
390,696 + Rru_A0320 0.76 +0.6
390,696 + Rru_A0320 0.76 +0.0
390,696 + Rru_A0320 0.76 +0.0
390,790 - Rru_A0320 0.81 +3.4
391,084 - +1.9
391,114 + +0.0
391,115 - +1.0
391,222 + Rru_A0321 0.22 +0.0
391,223 - Rru_A0321 0.23 +0.9
391,223 - Rru_A0321 0.23 +1.3
391,225 + Rru_A0321 0.23 +1.9
391,225 + Rru_A0321 0.23 +0.0
391,226 - Rru_A0321 0.23 -2.3
391,226 - Rru_A0321 0.23 +0.0
391,336 + Rru_A0321 0.44 +0.9
391,337 - Rru_A0321 0.44 +0.0
391,414 + Rru_A0321 0.59 +0.0
391,414 + Rru_A0321 0.59 +0.7
391,415 - Rru_A0321 0.59 +1.4
391,415 - Rru_A0321 0.59 +0.3
391,415 - Rru_A0321 0.59 +0.0
391,459 + Rru_A0321 0.68 +0.6
391,459 + Rru_A0321 0.68 +0.0
391,459 + Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +0.5
391,460 - Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +3.0
391,460 - Rru_A0321 0.68 +1.2
391,547 - Rru_A0321 0.85 -5.3
391,547 - Rru_A0321 0.85 +0.9
391,547 - Rru_A0321 0.85 -1.0
391,791 - Rru_A0322 0.33 +0.0
391,791 - Rru_A0322 0.33 +1.9
391,801 + Rru_A0322 0.35 +1.4
391,802 - Rru_A0322 0.36 +1.5
391,802 - Rru_A0322 0.36 +3.0
391,802 - Rru_A0322 0.36 +2.2
391,960 + Rru_A0322 0.70 +0.0
391,961 - Rru_A0322 0.70 +1.5
391,961 - Rru_A0322 0.70 +0.0
392,078 + -3.3
392,078 + +0.0
392,079 - +1.6
392,079 - +0.0
392,079 - +2.0
392,370 - Rru_A0323 0.44 +1.4
392,512 + Rru_A0323 0.70 -0.7
392,513 - Rru_A0323 0.71 +0.0
392,555 - Rru_A0323 0.79 +0.6

Or see this region's nucleotide sequence