Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0241

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0238 and Rru_A0239 are separated by 61 nucleotidesRru_A0239 and Rru_A0240 are separated by 12 nucleotidesRru_A0240 and Rru_A0241 are separated by 93 nucleotidesRru_A0241 and Rru_A0242 are separated by 14 nucleotides Rru_A0238: Rru_A0238 - hypothetical protein (NCBI), at 294,092 to 294,277 _A0238 Rru_A0239: Rru_A0239 - hypothetical protein (NCBI), at 294,339 to 294,563 _A0239 Rru_A0240: Rru_A0240 - NUDIX hydrolase (NCBI), at 294,576 to 295,127 _A0240 Rru_A0241: Rru_A0241 - DNA methylase N-4/N-6 (NCBI), at 295,221 to 298,040 _A0241 Rru_A0242: Rru_A0242 - Type III restriction enzyme, res subunit (NCBI), at 298,055 to 301,099 _A0242 Position (kb) 295 296 297 298 299Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.516 kb on + strand, within Rru_A0239at 294.518 kb on + strand, within Rru_A0239at 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.544 kb on - strandat 294.872 kb on + strand, within Rru_A0240at 294.872 kb on + strand, within Rru_A0240at 294.873 kb on - strand, within Rru_A0240at 294.874 kb on + strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.894 kb on + strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.930 kb on + strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 295.029 kb on + strand, within Rru_A0240at 295.093 kb on - strandat 295.093 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.125 kb on + strandat 295.125 kb on + strandat 295.126 kb on - strandat 295.222 kb on + strandat 295.222 kb on + strandat 295.223 kb on - strandat 295.223 kb on - strandat 295.223 kb on - strandat 295.323 kb on - strandat 295.323 kb on - strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.414 kb on + strandat 295.415 kb on - strandat 295.415 kb on - strandat 295.446 kb on - strandat 295.448 kb on - strandat 295.523 kb on + strand, within Rru_A0241at 295.523 kb on + strand, within Rru_A0241at 295.524 kb on - strand, within Rru_A0241at 296.141 kb on - strand, within Rru_A0241at 296.141 kb on - strand, within Rru_A0241at 296.153 kb on - strand, within Rru_A0241at 296.158 kb on + strand, within Rru_A0241at 296.158 kb on + strand, within Rru_A0241at 296.397 kb on - strand, within Rru_A0241at 296.429 kb on - strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.533 kb on + strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.534 kb on - strand, within Rru_A0241at 296.536 kb on + strand, within Rru_A0241at 296.536 kb on + strand, within Rru_A0241at 296.536 kb on + strand, within Rru_A0241at 296.537 kb on - strand, within Rru_A0241at 296.543 kb on - strand, within Rru_A0241at 296.673 kb on + strand, within Rru_A0241at 296.674 kb on - strand, within Rru_A0241at 296.697 kb on + strand, within Rru_A0241at 296.697 kb on + strand, within Rru_A0241at 296.697 kb on + strand, within Rru_A0241at 297.056 kb on + strand, within Rru_A0241at 297.061 kb on - strand, within Rru_A0241at 297.078 kb on + strand, within Rru_A0241at 297.173 kb on + strand, within Rru_A0241at 297.264 kb on + strand, within Rru_A0241at 297.265 kb on - strand, within Rru_A0241at 297.406 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.415 kb on + strand, within Rru_A0241at 297.416 kb on - strand, within Rru_A0241at 297.416 kb on - strand, within Rru_A0241at 297.569 kb on - strand, within Rru_A0241at 297.569 kb on - strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.676 kb on + strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.677 kb on - strand, within Rru_A0241at 297.822 kb on - strandat 297.822 kb on - strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.824 kb on - strandat 297.824 kb on - strandat 297.919 kb on + strandat 297.919 kb on + strandat 298.040 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.185 kb on + strandat 298.186 kb on - strandat 298.186 kb on - strandat 298.306 kb on - strandat 298.306 kb on - strandat 298.369 kb on - strand, within Rru_A0242at 298.495 kb on + strand, within Rru_A0242at 298.495 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.530 kb on + strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.531 kb on - strand, within Rru_A0242at 298.560 kb on + strand, within Rru_A0242at 298.582 kb on + strand, within Rru_A0242at 298.627 kb on - strand, within Rru_A0242at 298.759 kb on - strand, within Rru_A0242at 298.759 kb on - strand, within Rru_A0242at 298.807 kb on + strand, within Rru_A0242at 298.808 kb on - strand, within Rru_A0242

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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294,492 + Rru_A0239 0.68 +0.0
294,492 + Rru_A0239 0.68 +0.4
294,492 + Rru_A0239 0.68 +0.0
294,493 - Rru_A0239 0.68 -6.0
294,493 - Rru_A0239 0.68 +2.2
294,493 - Rru_A0239 0.68 +0.0
294,493 - Rru_A0239 0.68 +2.0
294,493 - Rru_A0239 0.68 -1.0
294,494 + Rru_A0239 0.69 -1.8
294,494 + Rru_A0239 0.69 +1.7
294,495 - Rru_A0239 0.69 +0.0
294,495 - Rru_A0239 0.69 -3.8
294,516 + Rru_A0239 0.79 +1.9
294,518 + Rru_A0239 0.80 +0.0
294,543 + +0.0
294,543 + +2.7
294,543 + +2.5
294,543 + +0.0
294,543 + +2.3
294,543 + +1.7
294,543 + +1.7
294,543 + -1.0
294,544 - +0.0
294,872 + Rru_A0240 0.54 +0.0
294,872 + Rru_A0240 0.54 +1.4
294,873 - Rru_A0240 0.54 +1.8
294,874 + Rru_A0240 0.54 +2.5
294,875 - Rru_A0240 0.54 -1.0
294,875 - Rru_A0240 0.54 +0.0
294,875 - Rru_A0240 0.54 -0.4
294,875 - Rru_A0240 0.54 +0.0
294,894 + Rru_A0240 0.58 +0.0
294,895 - Rru_A0240 0.58 +2.3
294,895 - Rru_A0240 0.58 -3.9
294,895 - Rru_A0240 0.58 +0.0
294,896 + Rru_A0240 0.58 +0.0
294,896 + Rru_A0240 0.58 +2.3
294,897 - Rru_A0240 0.58 -1.8
294,897 - Rru_A0240 0.58 +0.0
294,930 + Rru_A0240 0.64 +0.0
294,931 - Rru_A0240 0.64 +1.6
294,931 - Rru_A0240 0.64 +2.4
294,931 - Rru_A0240 0.64 -0.4
294,931 - Rru_A0240 0.64 +0.7
295,029 + Rru_A0240 0.82 +1.9
295,093 - +2.0
295,093 - +0.0
295,114 - +0.0
295,114 - +2.0
295,114 - +0.0
295,114 - +1.8
295,125 + -0.2
295,125 + +1.6
295,126 - +0.0
295,222 + -1.0
295,222 + +0.0
295,223 - -1.0
295,223 - +1.8
295,223 - +2.5
295,323 - +0.0
295,323 - +0.0
295,390 + +0.0
295,390 + -1.3
295,390 + +0.0
295,390 + +0.0
295,391 - +0.0
295,391 - +0.0
295,391 - +0.0
295,391 - -4.8
295,391 - +0.0
295,391 - +2.3
295,391 - +4.7
295,414 + +2.4
295,415 - -1.5
295,415 - -0.8
295,446 - +0.6
295,448 - -4.6
295,523 + Rru_A0241 0.11 +2.1
295,523 + Rru_A0241 0.11 +3.3
295,524 - Rru_A0241 0.11 +1.0
296,141 - Rru_A0241 0.33 +0.0
296,141 - Rru_A0241 0.33 +2.7
296,153 - Rru_A0241 0.33 +0.7
296,158 + Rru_A0241 0.33 +0.2
296,158 + Rru_A0241 0.33 +0.0
296,397 - Rru_A0241 0.42 +0.0
296,429 - Rru_A0241 0.43 +2.8
296,533 + Rru_A0241 0.47 +1.5
296,533 + Rru_A0241 0.47 +2.9
296,533 + Rru_A0241 0.47 +3.2
296,533 + Rru_A0241 0.47 -0.8
296,533 + Rru_A0241 0.47 -3.7
296,534 - Rru_A0241 0.47 +0.0
296,534 - Rru_A0241 0.47 -0.6
296,534 - Rru_A0241 0.47 +0.0
296,534 - Rru_A0241 0.47 +1.8
296,534 - Rru_A0241 0.47 +0.0
296,534 - Rru_A0241 0.47 +0.5
296,536 + Rru_A0241 0.47 +0.0
296,536 + Rru_A0241 0.47 +0.0
296,536 + Rru_A0241 0.47 +0.0
296,537 - Rru_A0241 0.47 +0.0
296,543 - Rru_A0241 0.47 -0.5
296,673 + Rru_A0241 0.51 +2.8
296,674 - Rru_A0241 0.52 +2.2
296,697 + Rru_A0241 0.52 +1.5
296,697 + Rru_A0241 0.52 +2.0
296,697 + Rru_A0241 0.52 +2.2
297,056 + Rru_A0241 0.65 +1.2
297,061 - Rru_A0241 0.65 +1.3
297,078 + Rru_A0241 0.66 +3.0
297,173 + Rru_A0241 0.69 +1.0
297,264 + Rru_A0241 0.72 +2.8
297,265 - Rru_A0241 0.72 +2.5
297,406 + Rru_A0241 0.77 +0.0
297,415 + Rru_A0241 0.78 -1.0
297,415 + Rru_A0241 0.78 +3.1
297,415 + Rru_A0241 0.78 +0.9
297,415 + Rru_A0241 0.78 +0.0
297,415 + Rru_A0241 0.78 +1.4
297,415 + Rru_A0241 0.78 -1.5
297,415 + Rru_A0241 0.78 +0.0
297,415 + Rru_A0241 0.78 +1.3
297,416 - Rru_A0241 0.78 +2.8
297,416 - Rru_A0241 0.78 +1.5
297,569 - Rru_A0241 0.83 +0.0
297,569 - Rru_A0241 0.83 +2.2
297,676 + Rru_A0241 0.87 +0.2
297,676 + Rru_A0241 0.87 +0.8
297,676 + Rru_A0241 0.87 +0.0
297,676 + Rru_A0241 0.87 +0.4
297,677 - Rru_A0241 0.87 +2.2
297,677 - Rru_A0241 0.87 -1.0
297,677 - Rru_A0241 0.87 +0.0
297,822 - -2.0
297,822 - +2.3
297,823 + +1.3
297,823 + +0.0
297,823 + +0.0
297,823 + +1.0
297,823 + +2.5
297,824 - +2.6
297,824 - +0.0
297,919 + +0.0
297,919 + +0.0
298,040 + +0.0
298,185 + +0.0
298,185 + +1.3
298,185 + +0.0
298,185 + +0.0
298,185 + +2.1
298,186 - -4.9
298,186 - +1.0
298,306 - +2.9
298,306 - +0.0
298,369 - Rru_A0242 0.10 +1.4
298,495 + Rru_A0242 0.14 +1.1
298,495 + Rru_A0242 0.14 +2.0
298,530 + Rru_A0242 0.16 +0.0
298,530 + Rru_A0242 0.16 +3.0
298,530 + Rru_A0242 0.16 +2.3
298,530 + Rru_A0242 0.16 -0.6
298,530 + Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 +0.0
298,531 - Rru_A0242 0.16 -5.2
298,531 - Rru_A0242 0.16 +3.4
298,560 + Rru_A0242 0.17 +0.0
298,582 + Rru_A0242 0.17 +1.4
298,627 - Rru_A0242 0.19 +0.0
298,759 - Rru_A0242 0.23 -4.1
298,759 - Rru_A0242 0.23 +1.1
298,807 + Rru_A0242 0.25 +0.0
298,808 - Rru_A0242 0.25 +0.0

Or see this region's nucleotide sequence