Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0239

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0236 and Rru_A0237 are separated by 1 nucleotidesRru_A0237 and Rru_A0238 are separated by 99 nucleotidesRru_A0238 and Rru_A0239 are separated by 61 nucleotidesRru_A0239 and Rru_A0240 are separated by 12 nucleotidesRru_A0240 and Rru_A0241 are separated by 93 nucleotides Rru_A0236: Rru_A0236 - Camphor resistance CrcB protein (NCBI), at 293,245 to 293,634 _A0236 Rru_A0237: Rru_A0237 - Protein of unknown function DUF190 (NCBI), at 293,636 to 293,992 _A0237 Rru_A0238: Rru_A0238 - hypothetical protein (NCBI), at 294,092 to 294,277 _A0238 Rru_A0239: Rru_A0239 - hypothetical protein (NCBI), at 294,339 to 294,563 _A0239 Rru_A0240: Rru_A0240 - NUDIX hydrolase (NCBI), at 294,576 to 295,127 _A0240 Rru_A0241: Rru_A0241 - DNA methylase N-4/N-6 (NCBI), at 295,221 to 298,040 _A0241 Position (kb) 294 295Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 293.364 kb on + strand, within Rru_A0236at 293.364 kb on + strand, within Rru_A0236at 293.364 kb on + strand, within Rru_A0236at 293.478 kb on + strand, within Rru_A0236at 293.478 kb on + strand, within Rru_A0236at 293.479 kb on - strand, within Rru_A0236at 293.479 kb on - strand, within Rru_A0236at 293.630 kb on + strandat 293.631 kb on - strandat 293.690 kb on + strand, within Rru_A0237at 293.691 kb on - strand, within Rru_A0237at 293.691 kb on - strand, within Rru_A0237at 293.692 kb on + strand, within Rru_A0237at 294.054 kb on - strandat 294.071 kb on - strandat 294.163 kb on + strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.516 kb on + strand, within Rru_A0239at 294.518 kb on + strand, within Rru_A0239at 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.544 kb on - strandat 294.872 kb on + strand, within Rru_A0240at 294.872 kb on + strand, within Rru_A0240at 294.873 kb on - strand, within Rru_A0240at 294.874 kb on + strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.894 kb on + strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.930 kb on + strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 295.029 kb on + strand, within Rru_A0240at 295.093 kb on - strandat 295.093 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.114 kb on - strandat 295.125 kb on + strandat 295.125 kb on + strandat 295.126 kb on - strandat 295.222 kb on + strandat 295.222 kb on + strandat 295.223 kb on - strandat 295.223 kb on - strandat 295.223 kb on - strandat 295.323 kb on - strandat 295.323 kb on - strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.390 kb on + strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.391 kb on - strandat 295.414 kb on + strandat 295.415 kb on - strandat 295.415 kb on - strandat 295.446 kb on - strandat 295.448 kb on - strandat 295.523 kb on + strand, within Rru_A0241at 295.523 kb on + strand, within Rru_A0241at 295.524 kb on - strand, within Rru_A0241

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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293,364 + Rru_A0236 0.31 +0.0
293,364 + Rru_A0236 0.31 +0.0
293,364 + Rru_A0236 0.31 +0.0
293,478 + Rru_A0236 0.60 +1.6
293,478 + Rru_A0236 0.60 +0.1
293,479 - Rru_A0236 0.60 +1.6
293,479 - Rru_A0236 0.60 +1.9
293,630 + +0.0
293,631 - +0.0
293,690 + Rru_A0237 0.15 -0.4
293,691 - Rru_A0237 0.15 +0.0
293,691 - Rru_A0237 0.15 +0.0
293,692 + Rru_A0237 0.16 +0.0
294,054 - +0.0
294,071 - -4.7
294,163 + Rru_A0238 0.38 +1.4
294,164 - Rru_A0238 0.39 +1.3
294,164 - Rru_A0238 0.39 +0.0
294,164 - Rru_A0238 0.39 +0.0
294,492 + Rru_A0239 0.68 +0.0
294,492 + Rru_A0239 0.68 +0.4
294,492 + Rru_A0239 0.68 +0.0
294,493 - Rru_A0239 0.68 -6.0
294,493 - Rru_A0239 0.68 +2.2
294,493 - Rru_A0239 0.68 +0.0
294,493 - Rru_A0239 0.68 +2.0
294,493 - Rru_A0239 0.68 -1.0
294,494 + Rru_A0239 0.69 -1.8
294,494 + Rru_A0239 0.69 +1.7
294,495 - Rru_A0239 0.69 +0.0
294,495 - Rru_A0239 0.69 -3.8
294,516 + Rru_A0239 0.79 +1.9
294,518 + Rru_A0239 0.80 +0.0
294,543 + +0.0
294,543 + +2.7
294,543 + +2.5
294,543 + +0.0
294,543 + +2.3
294,543 + +1.7
294,543 + +1.7
294,543 + -1.0
294,544 - +0.0
294,872 + Rru_A0240 0.54 +0.0
294,872 + Rru_A0240 0.54 +1.4
294,873 - Rru_A0240 0.54 +1.8
294,874 + Rru_A0240 0.54 +2.5
294,875 - Rru_A0240 0.54 -1.0
294,875 - Rru_A0240 0.54 +0.0
294,875 - Rru_A0240 0.54 -0.4
294,875 - Rru_A0240 0.54 +0.0
294,894 + Rru_A0240 0.58 +0.0
294,895 - Rru_A0240 0.58 +2.3
294,895 - Rru_A0240 0.58 -3.9
294,895 - Rru_A0240 0.58 +0.0
294,896 + Rru_A0240 0.58 +0.0
294,896 + Rru_A0240 0.58 +2.3
294,897 - Rru_A0240 0.58 -1.8
294,897 - Rru_A0240 0.58 +0.0
294,930 + Rru_A0240 0.64 +0.0
294,931 - Rru_A0240 0.64 +1.6
294,931 - Rru_A0240 0.64 +2.4
294,931 - Rru_A0240 0.64 -0.4
294,931 - Rru_A0240 0.64 +0.7
295,029 + Rru_A0240 0.82 +1.9
295,093 - +2.0
295,093 - +0.0
295,114 - +0.0
295,114 - +2.0
295,114 - +0.0
295,114 - +1.8
295,125 + -0.2
295,125 + +1.6
295,126 - +0.0
295,222 + -1.0
295,222 + +0.0
295,223 - -1.0
295,223 - +1.8
295,223 - +2.5
295,323 - +0.0
295,323 - +0.0
295,390 + +0.0
295,390 + -1.3
295,390 + +0.0
295,390 + +0.0
295,391 - +0.0
295,391 - +0.0
295,391 - +0.0
295,391 - -4.8
295,391 - +0.0
295,391 - +2.3
295,391 - +4.7
295,414 + +2.4
295,415 - -1.5
295,415 - -0.8
295,446 - +0.6
295,448 - -4.6
295,523 + Rru_A0241 0.11 +2.1
295,523 + Rru_A0241 0.11 +3.3
295,524 - Rru_A0241 0.11 +1.0

Or see this region's nucleotide sequence