Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0185

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0184 and Rru_A0185 overlap by 4 nucleotidesRru_A0185 and Rru_A0186 overlap by 4 nucleotides Rru_A0184: Rru_A0184 - Protein of unknown function DUF324 (NCBI), at 220,433 to 222,079 _A0184 Rru_A0185: Rru_A0185 - hypothetical protein (NCBI), at 222,076 to 224,034 _A0185 Rru_A0186: Rru_A0186 - hypothetical protein (NCBI), at 224,031 to 225,704 _A0186 Position (kb) 222 223 224 225Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 221.231 kb on + strand, within Rru_A0184at 221.231 kb on + strand, within Rru_A0184at 221.232 kb on - strand, within Rru_A0184at 221.607 kb on + strand, within Rru_A0184at 221.607 kb on + strand, within Rru_A0184at 221.607 kb on + strand, within Rru_A0184at 221.608 kb on - strand, within Rru_A0184at 221.841 kb on + strand, within Rru_A0184at 221.841 kb on + strand, within Rru_A0184at 221.842 kb on - strand, within Rru_A0184at 222.104 kb on - strandat 222.104 kb on - strandat 222.104 kb on - strandat 222.272 kb on - strand, within Rru_A0185at 222.299 kb on + strand, within Rru_A0185at 222.398 kb on + strand, within Rru_A0185at 222.398 kb on + strand, within Rru_A0185at 222.398 kb on + strand, within Rru_A0185at 222.399 kb on - strand, within Rru_A0185at 222.399 kb on - strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.652 kb on + strand, within Rru_A0185at 222.906 kb on + strand, within Rru_A0185at 223.276 kb on + strand, within Rru_A0185at 223.276 kb on + strand, within Rru_A0185at 223.277 kb on - strand, within Rru_A0185at 223.357 kb on + strand, within Rru_A0185at 224.071 kb on + strandat 224.072 kb on - strandat 224.211 kb on + strand, within Rru_A0186at 224.212 kb on - strand, within Rru_A0186at 224.253 kb on - strand, within Rru_A0186at 224.253 kb on - strand, within Rru_A0186at 224.330 kb on + strand, within Rru_A0186at 224.330 kb on + strand, within Rru_A0186at 224.330 kb on + strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.465 kb on - strand, within Rru_A0186at 224.478 kb on + strand, within Rru_A0186at 224.478 kb on + strand, within Rru_A0186at 224.479 kb on - strand, within Rru_A0186at 224.479 kb on - strand, within Rru_A0186at 224.571 kb on + strand, within Rru_A0186at 224.571 kb on + strand, within Rru_A0186at 224.857 kb on - strand, within Rru_A0186at 224.946 kb on - strand, within Rru_A0186at 224.980 kb on + strand, within Rru_A0186at 225.032 kb on + strand, within Rru_A0186

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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221,231 + Rru_A0184 0.48 +0.0
221,231 + Rru_A0184 0.48 +3.5
221,232 - Rru_A0184 0.49 +1.1
221,607 + Rru_A0184 0.71 +0.0
221,607 + Rru_A0184 0.71 +0.0
221,607 + Rru_A0184 0.71 +1.4
221,608 - Rru_A0184 0.71 -3.9
221,841 + Rru_A0184 0.85 +0.0
221,841 + Rru_A0184 0.85 +0.0
221,842 - Rru_A0184 0.86 +0.0
222,104 - +0.0
222,104 - +1.6
222,104 - +0.4
222,272 - Rru_A0185 0.10 +0.0
222,299 + Rru_A0185 0.11 +0.0
222,398 + Rru_A0185 0.16 +0.0
222,398 + Rru_A0185 0.16 -0.2
222,398 + Rru_A0185 0.16 +3.4
222,399 - Rru_A0185 0.16 +1.3
222,399 - Rru_A0185 0.16 +3.7
222,402 + Rru_A0185 0.17 +2.0
222,402 + Rru_A0185 0.17 +0.0
222,402 + Rru_A0185 0.17 +0.5
222,402 + Rru_A0185 0.17 +0.0
222,402 + Rru_A0185 0.17 +3.4
222,402 + Rru_A0185 0.17 +0.9
222,402 + Rru_A0185 0.17 -0.2
222,402 + Rru_A0185 0.17 +0.0
222,652 + Rru_A0185 0.29 +3.4
222,906 + Rru_A0185 0.42 +0.8
223,276 + Rru_A0185 0.61 +4.3
223,276 + Rru_A0185 0.61 +0.0
223,277 - Rru_A0185 0.61 -0.8
223,357 + Rru_A0185 0.65 +4.4
224,071 + +1.7
224,072 - -1.3
224,211 + Rru_A0186 0.11 +2.5
224,212 - Rru_A0186 0.11 +0.0
224,253 - Rru_A0186 0.13 +2.2
224,253 - Rru_A0186 0.13 +2.8
224,330 + Rru_A0186 0.18 -0.6
224,330 + Rru_A0186 0.18 +1.6
224,330 + Rru_A0186 0.18 +0.0
224,331 - Rru_A0186 0.18 +1.0
224,331 - Rru_A0186 0.18 +0.0
224,331 - Rru_A0186 0.18 +2.5
224,331 - Rru_A0186 0.18 +1.6
224,331 - Rru_A0186 0.18 +0.0
224,465 - Rru_A0186 0.26 +0.0
224,478 + Rru_A0186 0.27 +1.6
224,478 + Rru_A0186 0.27 +1.7
224,479 - Rru_A0186 0.27 -1.0
224,479 - Rru_A0186 0.27 +3.7
224,571 + Rru_A0186 0.32 +1.7
224,571 + Rru_A0186 0.32 +0.0
224,857 - Rru_A0186 0.49 +0.0
224,946 - Rru_A0186 0.55 +1.8
224,980 + Rru_A0186 0.57 +1.9
225,032 + Rru_A0186 0.60 +2.3

Or see this region's nucleotide sequence