Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0134 and Rru_A0135 are separated by 59 nucleotides Rru_A0135 and Rru_A0136 are separated by 118 nucleotides
Rru_A0134: Rru_A0134 - Succinic semialdehyde dehydrogenase (NCBI), at 157,179 to 158,666
_A0134
Rru_A0135: Rru_A0135 - molybdenum ABC transporter ATP-binding protein (NCBI), at 158,726 to 159,301
_A0135
Rru_A0136: Rru_A0136 - Protein of unknown function DUF6, transmembrane (NCBI), at 159,420 to 160,346
_A0136
Position (kb) 158
159
160 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 157.764 kb on - strand, within Rru_A0134 at 158.100 kb on + strand, within Rru_A0134 at 158.100 kb on + strand, within Rru_A0134 at 158.101 kb on - strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.316 kb on + strand, within Rru_A0134 at 158.316 kb on + strand, within Rru_A0134 at 158.316 kb on + strand, within Rru_A0134 at 158.317 kb on - strand, within Rru_A0134 at 158.317 kb on - strand, within Rru_A0134 at 158.463 kb on + strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.512 kb on + strand, within Rru_A0134 at 158.512 kb on + strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.644 kb on - strand at 158.644 kb on - strand at 158.644 kb on - strand at 159.076 kb on - strand, within Rru_A0135 at 159.085 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.186 kb on - strand, within Rru_A0135 at 159.189 kb on + strand, within Rru_A0135 at 159.189 kb on + strand, within Rru_A0135 at 159.190 kb on - strand, within Rru_A0135 at 159.304 kb on + strand at 159.304 kb on + strand at 159.305 kb on - strand at 159.305 kb on - strand at 159.305 kb on - strand at 159.343 kb on + strand at 159.678 kb on + strand, within Rru_A0136 at 159.963 kb on + strand, within Rru_A0136 at 159.963 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.201 kb on - strand, within Rru_A0136
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 157,764 - Rru_A0134 0.39 +3.0 158,100 + Rru_A0134 0.62 +0.0 158,100 + Rru_A0134 0.62 +1.7 158,101 - Rru_A0134 0.62 +3.0 158,118 + Rru_A0134 0.63 -0.2 158,118 + Rru_A0134 0.63 +0.0 158,118 + Rru_A0134 0.63 +1.9 158,118 + Rru_A0134 0.63 +1.3 158,118 + Rru_A0134 0.63 +1.1 158,118 + Rru_A0134 0.63 +1.1 158,119 - Rru_A0134 0.63 +2.0 158,119 - Rru_A0134 0.63 +2.9 158,119 - Rru_A0134 0.63 +2.9 158,119 - Rru_A0134 0.63 +0.0 158,119 - Rru_A0134 0.63 +1.8 158,316 + Rru_A0134 0.76 +1.6 158,316 + Rru_A0134 0.76 +0.0 158,316 + Rru_A0134 0.76 +0.0 158,317 - Rru_A0134 0.76 +1.4 158,317 - Rru_A0134 0.76 -0.8 158,463 + Rru_A0134 0.86 -0.6 158,464 - Rru_A0134 0.86 +2.9 158,464 - Rru_A0134 0.86 -5.1 158,464 - Rru_A0134 0.86 +0.6 158,512 + Rru_A0134 0.90 +0.0 158,512 + Rru_A0134 0.90 -3.4 158,513 - Rru_A0134 0.90 +1.4 158,513 - Rru_A0134 0.90 +1.3 158,513 - Rru_A0134 0.90 +0.0 158,513 - Rru_A0134 0.90 +0.0 158,643 + +2.3 158,643 + +2.5 158,643 + +4.4 158,643 + +0.0 158,643 + -0.1 158,644 - +2.2 158,644 - +1.7 158,644 - -1.5 159,076 - Rru_A0135 0.61 +1.7 159,085 + Rru_A0135 0.62 +0.6 159,185 + Rru_A0135 0.80 -1.0 159,185 + Rru_A0135 0.80 +2.6 159,185 + Rru_A0135 0.80 +1.2 159,186 - Rru_A0135 0.80 -5.7 159,189 + Rru_A0135 0.80 +0.0 159,189 + Rru_A0135 0.80 +0.2 159,190 - Rru_A0135 0.81 -1.0 159,304 + +2.9 159,304 + +1.1 159,305 - +3.1 159,305 - +2.0 159,305 - +1.0 159,343 + +0.0 159,678 + Rru_A0136 0.28 +0.0 159,963 + Rru_A0136 0.59 +2.4 159,963 + Rru_A0136 0.59 -0.6 160,055 + Rru_A0136 0.69 +0.9 160,055 + Rru_A0136 0.69 +0.0 160,055 + Rru_A0136 0.69 +1.7 160,055 + Rru_A0136 0.69 +0.0 160,056 - Rru_A0136 0.69 +1.9 160,056 - Rru_A0136 0.69 +0.0 160,056 - Rru_A0136 0.69 +1.3 160,200 + Rru_A0136 0.84 -1.0 160,200 + Rru_A0136 0.84 +0.0 160,200 + Rru_A0136 0.84 +4.1 160,201 - Rru_A0136 0.84 +1.0
Or see this region's nucleotide sequence