Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0102 and Rru_A0103 are separated by 164 nucleotides Rru_A0103 and Rru_AR0002 are separated by 37 nucleotides Rru_AR0002 and Rru_A0104 are separated by 341 nucleotides Rru_A0104 and Rru_A0105 are separated by 8 nucleotides
Rru_A0102: Rru_A0102 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 116,071 to 116,907
_A0102
Rru_A0103: Rru_A0103 - SlyX (NCBI), at 117,072 to 117,287
_A0103
Rru_AR0002: Rru_AR0002 - tRNA-Arg (NCBI), at 117,325 to 117,401
_AR0002
Rru_A0104: Rru_A0104 - Alpha-2-macroglobulin-like protein (NCBI), at 117,743 to 123,022
_A0104
Rru_A0105: Rru_A0105 - Penicillin-binding protein 1C (NCBI), at 123,031 to 125,151
_A0105
Position (kb) 117
118
119
120
121
122
123
124 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 116.975 kb on + strand at 116.976 kb on - strand at 116.991 kb on + strand at 116.991 kb on + strand at 116.991 kb on + strand at 116.992 kb on - strand at 116.992 kb on - strand at 116.992 kb on - strand at 116.992 kb on - strand at 117.017 kb on + strand at 117.018 kb on - strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.266 kb on + strand at 117.266 kb on + strand at 117.282 kb on + strand at 117.282 kb on + strand at 117.283 kb on - strand at 117.421 kb on - strand at 117.421 kb on - strand at 117.479 kb on + strand at 117.479 kb on + strand at 117.551 kb on + strand at 117.551 kb on + strand at 117.551 kb on + strand at 117.634 kb on - strand at 117.634 kb on - strand at 117.649 kb on + strand at 117.649 kb on + strand at 117.652 kb on + strand at 117.661 kb on - strand at 117.947 kb on + strand at 117.947 kb on + strand at 117.947 kb on + strand at 117.947 kb on + strand at 117.947 kb on + strand at 117.948 kb on - strand at 118.107 kb on - strand at 118.427 kb on + strand, within Rru_A0104 at 118.427 kb on + strand, within Rru_A0104 at 118.427 kb on + strand, within Rru_A0104 at 118.427 kb on + strand, within Rru_A0104 at 118.427 kb on + strand, within Rru_A0104 at 118.428 kb on - strand, within Rru_A0104 at 118.634 kb on + strand, within Rru_A0104 at 118.634 kb on + strand, within Rru_A0104 at 118.634 kb on + strand, within Rru_A0104 at 118.634 kb on + strand, within Rru_A0104 at 118.634 kb on + strand, within Rru_A0104 at 118.635 kb on - strand, within Rru_A0104 at 118.635 kb on - strand, within Rru_A0104 at 118.635 kb on - strand, within Rru_A0104 at 118.635 kb on - strand, within Rru_A0104 at 118.635 kb on - strand, within Rru_A0104 at 118.635 kb on - strand, within Rru_A0104 at 118.636 kb on + strand, within Rru_A0104 at 118.917 kb on - strand, within Rru_A0104 at 118.917 kb on - strand, within Rru_A0104 at 118.917 kb on - strand, within Rru_A0104 at 119.210 kb on + strand, within Rru_A0104 at 119.211 kb on - strand, within Rru_A0104 at 119.321 kb on + strand, within Rru_A0104 at 119.322 kb on - strand, within Rru_A0104 at 119.322 kb on - strand, within Rru_A0104 at 119.322 kb on - strand, within Rru_A0104 at 119.339 kb on + strand, within Rru_A0104 at 119.717 kb on + strand, within Rru_A0104 at 120.146 kb on + strand, within Rru_A0104 at 120.146 kb on + strand, within Rru_A0104 at 120.146 kb on + strand, within Rru_A0104 at 120.147 kb on - strand, within Rru_A0104 at 120.147 kb on - strand, within Rru_A0104 at 120.147 kb on - strand, within Rru_A0104 at 120.147 kb on - strand, within Rru_A0104 at 120.147 kb on - strand, within Rru_A0104 at 120.197 kb on + strand, within Rru_A0104 at 120.400 kb on + strand, within Rru_A0104 at 120.597 kb on - strand, within Rru_A0104 at 120.597 kb on - strand, within Rru_A0104 at 120.597 kb on - strand, within Rru_A0104 at 120.597 kb on - strand, within Rru_A0104 at 120.863 kb on + strand, within Rru_A0104 at 120.864 kb on - strand, within Rru_A0104 at 120.864 kb on - strand, within Rru_A0104 at 120.864 kb on - strand, within Rru_A0104 at 120.864 kb on - strand, within Rru_A0104 at 120.864 kb on - strand, within Rru_A0104 at 120.866 kb on + strand, within Rru_A0104 at 120.866 kb on + strand, within Rru_A0104 at 120.866 kb on + strand, within Rru_A0104 at 120.866 kb on + strand, within Rru_A0104 at 120.867 kb on - strand, within Rru_A0104 at 120.867 kb on - strand, within Rru_A0104 at 120.870 kb on - strand, within Rru_A0104 at 120.908 kb on + strand, within Rru_A0104 at 120.909 kb on - strand, within Rru_A0104 at 120.909 kb on - strand, within Rru_A0104 at 120.909 kb on - strand, within Rru_A0104 at 121.246 kb on + strand, within Rru_A0104 at 121.246 kb on + strand, within Rru_A0104 at 121.246 kb on + strand, within Rru_A0104 at 121.247 kb on - strand, within Rru_A0104 at 121.247 kb on - strand, within Rru_A0104 at 121.247 kb on - strand, within Rru_A0104 at 121.646 kb on + strand, within Rru_A0104 at 121.691 kb on + strand, within Rru_A0104 at 121.847 kb on + strand, within Rru_A0104 at 121.847 kb on + strand, within Rru_A0104 at 121.848 kb on - strand, within Rru_A0104 at 121.848 kb on - strand, within Rru_A0104 at 121.985 kb on + strand, within Rru_A0104 at 121.986 kb on - strand, within Rru_A0104 at 121.994 kb on + strand, within Rru_A0104 at 121.994 kb on + strand, within Rru_A0104 at 121.995 kb on - strand, within Rru_A0104 at 121.995 kb on - strand, within Rru_A0104 at 121.995 kb on - strand, within Rru_A0104 at 121.995 kb on - strand, within Rru_A0104 at 122.051 kb on - strand, within Rru_A0104 at 122.054 kb on + strand, within Rru_A0104 at 122.054 kb on + strand, within Rru_A0104 at 122.054 kb on + strand, within Rru_A0104 at 122.054 kb on + strand, within Rru_A0104 at 122.055 kb on - strand, within Rru_A0104 at 122.055 kb on - strand, within Rru_A0104 at 122.055 kb on - strand, within Rru_A0104 at 122.055 kb on - strand, within Rru_A0104 at 122.055 kb on - strand, within Rru_A0104 at 122.202 kb on - strand, within Rru_A0104 at 122.202 kb on - strand, within Rru_A0104 at 122.849 kb on + strand at 122.849 kb on + strand at 122.849 kb on + strand at 122.849 kb on + strand at 122.850 kb on - strand at 122.850 kb on - strand at 122.900 kb on + strand at 122.901 kb on - strand at 122.901 kb on - strand at 122.901 kb on - strand at 122.959 kb on + strand at 122.960 kb on - strand at 123.262 kb on + strand, within Rru_A0105 at 123.262 kb on + strand, within Rru_A0105 at 123.262 kb on + strand, within Rru_A0105 at 123.263 kb on - strand, within Rru_A0105 at 123.517 kb on + strand, within Rru_A0105 at 123.518 kb on - strand, within Rru_A0105 at 124.007 kb on - strand, within Rru_A0105
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 116,975 + +2.7 116,976 - +0.4 116,991 + +1.2 116,991 + +0.0 116,991 + +0.0 116,992 - +2.4 116,992 - -1.5 116,992 - -3.6 116,992 - +0.4 117,017 + +0.0 117,018 - +2.2 117,067 + +3.1 117,067 + +2.1 117,067 + +1.8 117,067 + +1.7 117,067 + +0.0 117,067 + +1.2 117,067 + +0.0 117,068 - +0.0 117,068 - +1.7 117,068 - -1.3 117,068 - +0.0 117,068 - +0.0 117,068 - +0.0 117,068 - +0.2 117,068 - +0.0 117,068 - +1.1 117,266 + -2.0 117,266 + +0.0 117,282 + +0.9 117,282 + +0.0 117,283 - +0.0 117,421 - +3.9 117,421 - -5.7 117,479 + +0.0 117,479 + +1.7 117,551 + -0.7 117,551 + +0.0 117,551 + +1.3 117,634 - +2.7 117,634 - +2.3 117,649 + +2.1 117,649 + -1.0 117,652 + +0.5 117,661 - +2.5 117,947 + +2.1 117,947 + +0.0 117,947 + -0.9 117,947 + +3.2 117,947 + -3.9 117,948 - +2.7 118,107 - +1.1 118,427 + Rru_A0104 0.13 +0.6 118,427 + Rru_A0104 0.13 +3.9 118,427 + Rru_A0104 0.13 +1.4 118,427 + Rru_A0104 0.13 +2.4 118,427 + Rru_A0104 0.13 -1.5 118,428 - Rru_A0104 0.13 +0.4 118,634 + Rru_A0104 0.17 +1.2 118,634 + Rru_A0104 0.17 +1.6 118,634 + Rru_A0104 0.17 +2.7 118,634 + Rru_A0104 0.17 -0.4 118,634 + Rru_A0104 0.17 +1.1 118,635 - Rru_A0104 0.17 +2.9 118,635 - Rru_A0104 0.17 +2.4 118,635 - Rru_A0104 0.17 +3.0 118,635 - Rru_A0104 0.17 -2.0 118,635 - Rru_A0104 0.17 +2.4 118,635 - Rru_A0104 0.17 +2.7 118,636 + Rru_A0104 0.17 +0.0 118,917 - Rru_A0104 0.22 +2.0 118,917 - Rru_A0104 0.22 +2.9 118,917 - Rru_A0104 0.22 +2.9 119,210 + Rru_A0104 0.28 +2.3 119,211 - Rru_A0104 0.28 +1.2 119,321 + Rru_A0104 0.30 +0.0 119,322 - Rru_A0104 0.30 +2.6 119,322 - Rru_A0104 0.30 +1.4 119,322 - Rru_A0104 0.30 -4.9 119,339 + Rru_A0104 0.30 +2.7 119,717 + Rru_A0104 0.37 +0.0 120,146 + Rru_A0104 0.46 +1.7 120,146 + Rru_A0104 0.46 +1.2 120,146 + Rru_A0104 0.46 +0.0 120,147 - Rru_A0104 0.46 +2.2 120,147 - Rru_A0104 0.46 +2.3 120,147 - Rru_A0104 0.46 +2.5 120,147 - Rru_A0104 0.46 +2.5 120,147 - Rru_A0104 0.46 +2.2 120,197 + Rru_A0104 0.46 +3.7 120,400 + Rru_A0104 0.50 +0.0 120,597 - Rru_A0104 0.54 +0.0 120,597 - Rru_A0104 0.54 -0.9 120,597 - Rru_A0104 0.54 +2.3 120,597 - Rru_A0104 0.54 +2.9 120,863 + Rru_A0104 0.59 -0.3 120,864 - Rru_A0104 0.59 +2.3 120,864 - Rru_A0104 0.59 +1.9 120,864 - Rru_A0104 0.59 +1.1 120,864 - Rru_A0104 0.59 +1.1 120,864 - Rru_A0104 0.59 +1.3 120,866 + Rru_A0104 0.59 +2.7 120,866 + Rru_A0104 0.59 +0.8 120,866 + Rru_A0104 0.59 +1.8 120,866 + Rru_A0104 0.59 +0.3 120,867 - Rru_A0104 0.59 +0.0 120,867 - Rru_A0104 0.59 +1.7 120,870 - Rru_A0104 0.59 +0.1 120,908 + Rru_A0104 0.60 +0.0 120,909 - Rru_A0104 0.60 +2.5 120,909 - Rru_A0104 0.60 +1.4 120,909 - Rru_A0104 0.60 +2.1 121,246 + Rru_A0104 0.66 -2.5 121,246 + Rru_A0104 0.66 +2.7 121,246 + Rru_A0104 0.66 +1.8 121,247 - Rru_A0104 0.66 +3.1 121,247 - Rru_A0104 0.66 +0.9 121,247 - Rru_A0104 0.66 +2.6 121,646 + Rru_A0104 0.74 +1.2 121,691 + Rru_A0104 0.75 +2.0 121,847 + Rru_A0104 0.78 +2.4 121,847 + Rru_A0104 0.78 +2.7 121,848 - Rru_A0104 0.78 -0.4 121,848 - Rru_A0104 0.78 +0.2 121,985 + Rru_A0104 0.80 +2.5 121,986 - Rru_A0104 0.80 -0.0 121,994 + Rru_A0104 0.81 +1.0 121,994 + Rru_A0104 0.81 +2.0 121,995 - Rru_A0104 0.81 +2.6 121,995 - Rru_A0104 0.81 +1.9 121,995 - Rru_A0104 0.81 +0.2 121,995 - Rru_A0104 0.81 +2.5 122,051 - Rru_A0104 0.82 +3.3 122,054 + Rru_A0104 0.82 +1.5 122,054 + Rru_A0104 0.82 +0.0 122,054 + Rru_A0104 0.82 -1.0 122,054 + Rru_A0104 0.82 +2.9 122,055 - Rru_A0104 0.82 +3.3 122,055 - Rru_A0104 0.82 +2.1 122,055 - Rru_A0104 0.82 +2.6 122,055 - Rru_A0104 0.82 +2.1 122,055 - Rru_A0104 0.82 +3.0 122,202 - Rru_A0104 0.84 +2.4 122,202 - Rru_A0104 0.84 +2.3 122,849 + +2.4 122,849 + +0.0 122,849 + +1.9 122,849 + -1.1 122,850 - +3.0 122,850 - +1.7 122,900 + +1.4 122,901 - +0.9 122,901 - +3.3 122,901 - +2.3 122,959 + +2.8 122,960 - +0.6 123,262 + Rru_A0105 0.11 +2.1 123,262 + Rru_A0105 0.11 +1.9 123,262 + Rru_A0105 0.11 -0.6 123,263 - Rru_A0105 0.11 +1.5 123,517 + Rru_A0105 0.23 +0.9 123,518 - Rru_A0105 0.23 +2.9 124,007 - Rru_A0105 0.46 +0.7
Or see this region's nucleotide sequence