Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0086

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0085 and Rru_A0086 overlap by 1 nucleotidesRru_A0086 and Rru_A0087 are separated by 1 nucleotides Rru_A0085: Rru_A0085 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 98,274 to 99,635 _A0085 Rru_A0086: Rru_A0086 - Protein of unknown function DUF188 (NCBI), at 99,635 to 100,087 _A0086 Rru_A0087: Rru_A0087 - HI0933-like protein (NCBI), at 100,089 to 101,330 _A0087 Position (kb) 99 100 101Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 98.636 kb on + strand, within Rru_A0085at 98.636 kb on + strand, within Rru_A0085at 98.637 kb on - strand, within Rru_A0085at 98.655 kb on + strand, within Rru_A0085at 98.655 kb on + strand, within Rru_A0085at 98.656 kb on - strand, within Rru_A0085at 98.739 kb on + strand, within Rru_A0085at 98.740 kb on - strand, within Rru_A0085at 98.741 kb on + strand, within Rru_A0085at 98.742 kb on - strand, within Rru_A0085at 98.764 kb on - strand, within Rru_A0085at 98.854 kb on - strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.856 kb on + strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.857 kb on - strand, within Rru_A0085at 98.982 kb on + strand, within Rru_A0085at 98.982 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.066 kb on + strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.067 kb on - strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.068 kb on + strand, within Rru_A0085at 99.069 kb on - strand, within Rru_A0085at 99.069 kb on - strand, within Rru_A0085at 99.129 kb on + strand, within Rru_A0085at 99.130 kb on - strand, within Rru_A0085at 99.130 kb on - strand, within Rru_A0085at 99.226 kb on + strand, within Rru_A0085at 99.503 kb on + strandat 99.504 kb on - strandat 99.535 kb on - strandat 99.535 kb on - strandat 99.535 kb on - strandat 99.612 kb on - strandat 99.839 kb on - strand, within Rru_A0086at 99.839 kb on - strand, within Rru_A0086at 100.833 kb on + strand, within Rru_A0087at 100.833 kb on + strand, within Rru_A0087at 100.833 kb on + strand, within Rru_A0087at 100.833 kb on + strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087at 100.834 kb on - strand, within Rru_A0087

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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98,636 + Rru_A0085 0.27 +0.0
98,636 + Rru_A0085 0.27 +1.9
98,637 - Rru_A0085 0.27 +3.1
98,655 + Rru_A0085 0.28 +1.8
98,655 + Rru_A0085 0.28 +0.0
98,656 - Rru_A0085 0.28 +0.0
98,739 + Rru_A0085 0.34 -3.3
98,740 - Rru_A0085 0.34 +0.5
98,741 + Rru_A0085 0.34 +0.0
98,742 - Rru_A0085 0.34 +0.0
98,764 - Rru_A0085 0.36 +0.6
98,854 - Rru_A0085 0.43 +1.5
98,856 + Rru_A0085 0.43 +0.0
98,856 + Rru_A0085 0.43 +1.8
98,856 + Rru_A0085 0.43 +1.3
98,856 + Rru_A0085 0.43 +1.8
98,856 + Rru_A0085 0.43 -0.3
98,857 - Rru_A0085 0.43 +0.0
98,857 - Rru_A0085 0.43 +1.5
98,857 - Rru_A0085 0.43 +0.0
98,857 - Rru_A0085 0.43 +0.0
98,857 - Rru_A0085 0.43 -2.0
98,857 - Rru_A0085 0.43 +1.4
98,857 - Rru_A0085 0.43 +1.3
98,982 + Rru_A0085 0.52 +2.7
98,982 + Rru_A0085 0.52 -5.2
99,066 + Rru_A0085 0.58 +2.4
99,066 + Rru_A0085 0.58 +0.0
99,066 + Rru_A0085 0.58 +1.0
99,067 - Rru_A0085 0.58 +1.7
99,067 - Rru_A0085 0.58 -1.5
99,067 - Rru_A0085 0.58 +0.0
99,067 - Rru_A0085 0.58 -1.4
99,068 + Rru_A0085 0.58 +2.2
99,068 + Rru_A0085 0.58 +0.0
99,068 + Rru_A0085 0.58 +0.0
99,069 - Rru_A0085 0.58 +0.0
99,069 - Rru_A0085 0.58 +1.0
99,129 + Rru_A0085 0.63 -0.4
99,130 - Rru_A0085 0.63 +2.5
99,130 - Rru_A0085 0.63 +2.2
99,226 + Rru_A0085 0.70 +0.0
99,503 + +0.0
99,504 - +1.0
99,535 - +2.4
99,535 - +0.0
99,535 - +2.6
99,612 - +0.0
99,839 - Rru_A0086 0.45 -2.3
99,839 - Rru_A0086 0.45 +1.8
100,833 + Rru_A0087 0.60 -1.5
100,833 + Rru_A0087 0.60 -3.6
100,833 + Rru_A0087 0.60 +0.0
100,833 + Rru_A0087 0.60 +2.1
100,834 - Rru_A0087 0.60 +1.9
100,834 - Rru_A0087 0.60 +2.5
100,834 - Rru_A0087 0.60 +3.3
100,834 - Rru_A0087 0.60 -5.0
100,834 - Rru_A0087 0.60 +0.0
100,834 - Rru_A0087 0.60 +3.0
100,834 - Rru_A0087 0.60 +0.0
100,834 - Rru_A0087 0.60 +0.0
100,834 - Rru_A0087 0.60 +0.0

Or see this region's nucleotide sequence