Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4224

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4223 and Ga0059261_4224 are separated by 3 nucleotidesGa0059261_4224 and Ga0059261_4225 are separated by 96 nucleotidesGa0059261_4225 and Ga0059261_4226 overlap by 38 nucleotides Ga0059261_4223: Ga0059261_4223 - 3-isopropylmalate dehydratase, large subunit, at 4,376,019 to 4,377,455 _4223 Ga0059261_4224: Ga0059261_4224 - hypothetical protein, at 4,377,459 to 4,377,599 _4224 Ga0059261_4225: Ga0059261_4225 - 3-isopropylmalate dehydratase, small subunit, at 4,377,696 to 4,378,325 _4225 Ga0059261_4226: Ga0059261_4226 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 4,378,288 to 4,379,289 _4226 Position (kb) 4377 4378Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4376.521 kb on + strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.640 kb on + strand, within Ga0059261_4223at 4376.641 kb on - strandat 4376.641 kb on - strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.653 kb on - strand, within Ga0059261_4223at 4376.653 kb on - strand, within Ga0059261_4223at 4376.655 kb on - strand, within Ga0059261_4223at 4376.770 kb on - strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.863 kb on - strand, within Ga0059261_4223at 4376.863 kb on - strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.020 kb on + strand, within Ga0059261_4223at 4377.020 kb on + strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.347 kb on - strandat 4377.445 kb on + strandat 4377.445 kb on + strandat 4377.445 kb on + strandat 4377.446 kb on - strandat 4377.446 kb on - strandat 4377.446 kb on - strandat 4377.446 kb on - strandat 4377.446 kb on - strandat 4377.519 kb on + strand, within Ga0059261_4224at 4377.519 kb on + strand, within Ga0059261_4224at 4377.519 kb on + strand, within Ga0059261_4224at 4377.662 kb on - strandat 4377.750 kb on - strandat 4377.750 kb on - strandat 4377.870 kb on + strand, within Ga0059261_4225at 4377.920 kb on + strand, within Ga0059261_4225at 4377.984 kb on + strand, within Ga0059261_4225at 4377.984 kb on + strand, within Ga0059261_4225at 4377.984 kb on + strand, within Ga0059261_4225at 4377.985 kb on - strand, within Ga0059261_4225at 4377.985 kb on - strand, within Ga0059261_4225at 4378.129 kb on - strand, within Ga0059261_4225at 4378.409 kb on - strand, within Ga0059261_4226at 4378.409 kb on - strand, within Ga0059261_4226at 4378.434 kb on + strand, within Ga0059261_4226at 4378.434 kb on + strand, within Ga0059261_4226at 4378.435 kb on - strand, within Ga0059261_4226at 4378.435 kb on - strand, within Ga0059261_4226at 4378.438 kb on + strand, within Ga0059261_4226at 4378.438 kb on + strand, within Ga0059261_4226at 4378.439 kb on - strand, within Ga0059261_4226at 4378.439 kb on - strand, within Ga0059261_4226at 4378.439 kb on - strand, within Ga0059261_4226

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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4,376,521 + Ga0059261_4223 0.35 -4.0
4,376,522 - Ga0059261_4223 0.35 -4.6
4,376,522 - Ga0059261_4223 0.35 -4.0
4,376,522 - Ga0059261_4223 0.35 -4.1
4,376,522 - Ga0059261_4223 0.35 -4.5
4,376,522 - Ga0059261_4223 0.35 -3.2
4,376,640 + Ga0059261_4223 0.43 -4.2
4,376,641 - -2.2
4,376,641 - Ga0059261_4223 0.43 -4.1
4,376,652 + Ga0059261_4223 0.44 -1.9
4,376,652 + Ga0059261_4223 0.44 -4.7
4,376,652 + Ga0059261_4223 0.44 -3.6
4,376,652 + Ga0059261_4223 0.44 -4.6
4,376,652 + Ga0059261_4223 0.44 -4.3
4,376,653 - Ga0059261_4223 0.44 -3.6
4,376,653 - Ga0059261_4223 0.44 -4.2
4,376,655 - Ga0059261_4223 0.44 -2.1
4,376,770 - Ga0059261_4223 0.52 -2.0
4,376,862 + Ga0059261_4223 0.59 -4.7
4,376,862 + Ga0059261_4223 0.59 -5.3
4,376,862 + Ga0059261_4223 0.59 -3.8
4,376,863 - Ga0059261_4223 0.59 -4.2
4,376,863 - Ga0059261_4223 0.59 -4.5
4,377,018 + Ga0059261_4223 0.70 -3.8
4,377,018 + Ga0059261_4223 0.70 -5.2
4,377,018 + Ga0059261_4223 0.70 -4.5
4,377,018 + Ga0059261_4223 0.70 -3.0
4,377,018 + Ga0059261_4223 0.70 -4.6
4,377,018 + Ga0059261_4223 0.70 -5.3
4,377,018 + Ga0059261_4223 0.70 -3.2
4,377,018 + Ga0059261_4223 0.70 -4.2
4,377,018 + Ga0059261_4223 0.70 -2.7
4,377,019 - Ga0059261_4223 0.70 -2.4
4,377,019 - Ga0059261_4223 0.70 -3.0
4,377,019 - Ga0059261_4223 0.70 -2.5
4,377,019 - Ga0059261_4223 0.70 -2.6
4,377,019 - Ga0059261_4223 0.70 -3.5
4,377,020 + Ga0059261_4223 0.70 -1.8
4,377,020 + Ga0059261_4223 0.70 -6.5
4,377,021 - Ga0059261_4223 0.70 -4.3
4,377,021 - Ga0059261_4223 0.70 -3.3
4,377,021 - Ga0059261_4223 0.70 -3.6
4,377,021 - Ga0059261_4223 0.70 -4.0
4,377,021 - Ga0059261_4223 0.70 -4.9
4,377,021 - Ga0059261_4223 0.70 -3.5
4,377,021 - Ga0059261_4223 0.70 -2.2
4,377,021 - Ga0059261_4223 0.70 -2.5
4,377,347 - -0.1
4,377,445 + +0.1
4,377,445 + -0.1
4,377,445 + +0.6
4,377,446 - -3.1
4,377,446 - -2.7
4,377,446 - -4.6
4,377,446 - -4.7
4,377,446 - -2.8
4,377,519 + Ga0059261_4224 0.43 -0.5
4,377,519 + Ga0059261_4224 0.43 -3.9
4,377,519 + Ga0059261_4224 0.43 -1.2
4,377,662 - -3.2
4,377,750 - -2.3
4,377,750 - -4.1
4,377,870 + Ga0059261_4225 0.28 -4.5
4,377,920 + Ga0059261_4225 0.36 -3.7
4,377,984 + Ga0059261_4225 0.46 -4.6
4,377,984 + Ga0059261_4225 0.46 -5.0
4,377,984 + Ga0059261_4225 0.46 -4.9
4,377,985 - Ga0059261_4225 0.46 -5.4
4,377,985 - Ga0059261_4225 0.46 -4.2
4,378,129 - Ga0059261_4225 0.69 -4.2
4,378,409 - Ga0059261_4226 0.12 -1.1
4,378,409 - Ga0059261_4226 0.12 +0.1
4,378,434 + Ga0059261_4226 0.15 +1.3
4,378,434 + Ga0059261_4226 0.15 +0.5
4,378,435 - Ga0059261_4226 0.15 +0.7
4,378,435 - Ga0059261_4226 0.15 +0.7
4,378,438 + Ga0059261_4226 0.15 -0.6
4,378,438 + Ga0059261_4226 0.15 -0.9
4,378,439 - Ga0059261_4226 0.15 +0.0
4,378,439 - Ga0059261_4226 0.15 -0.5
4,378,439 - Ga0059261_4226 0.15 -1.9

Or see this region's nucleotide sequence