Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2295

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2293 and Ga0059261_2294 overlap by 4 nucleotidesGa0059261_2294 and Ga0059261_2295 overlap by 1 nucleotidesGa0059261_2295 and Ga0059261_2296 overlap by 8 nucleotidesGa0059261_2296 and Ga0059261_2297 are separated by 31 nucleotides Ga0059261_2293: Ga0059261_2293 - cell division ATP-binding protein FtsE, at 2,396,872 to 2,397,579 _2293 Ga0059261_2294: Ga0059261_2294 - Cell division protein, at 2,397,576 to 2,398,466 _2294 Ga0059261_2295: Ga0059261_2295 - DUF218 domain, at 2,398,466 to 2,399,014 _2295 Ga0059261_2296: Ga0059261_2296 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,399,007 to 2,399,693 _2296 Ga0059261_2297: Ga0059261_2297 - Predicted integral membrane protein, at 2,399,725 to 2,400,210 _2297 Position (kb) 2398 2399 2400Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2397.553 kb on + strandat 2397.633 kb on - strandat 2398.250 kb on + strand, within Ga0059261_2294at 2398.251 kb on - strand, within Ga0059261_2294at 2398.274 kb on + strand, within Ga0059261_2294at 2398.684 kb on - strand, within Ga0059261_2295at 2398.684 kb on - strand, within Ga0059261_2295at 2398.768 kb on + strand, within Ga0059261_2295at 2398.817 kb on + strand, within Ga0059261_2295at 2398.817 kb on + strand, within Ga0059261_2295at 2398.967 kb on + strandat 2398.967 kb on + strandat 2398.967 kb on + strandat 2398.967 kb on + strandat 2398.967 kb on + strandat 2398.967 kb on + strandat 2398.968 kb on - strandat 2399.049 kb on + strandat 2399.121 kb on + strandat 2399.122 kb on - strandat 2399.794 kb on + strand, within Ga0059261_2297at 2399.794 kb on + strand, within Ga0059261_2297at 2399.794 kb on + strand, within Ga0059261_2297at 2399.795 kb on - strand, within Ga0059261_2297at 2399.795 kb on - strand, within Ga0059261_2297at 2400.007 kb on + strand, within Ga0059261_2297at 2400.007 kb on + strand, within Ga0059261_2297at 2400.007 kb on + strand, within Ga0059261_2297at 2400.007 kb on + strand, within Ga0059261_2297at 2400.007 kb on + strand, within Ga0059261_2297at 2400.007 kb on + strand, within Ga0059261_2297at 2400.008 kb on - strand, within Ga0059261_2297at 2400.008 kb on - strand, within Ga0059261_2297at 2400.008 kb on - strand, within Ga0059261_2297at 2400.008 kb on - strand, within Ga0059261_2297at 2400.008 kb on - strand, within Ga0059261_2297at 2400.008 kb on - strand, within Ga0059261_2297

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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2,397,553 + -0.9
2,397,633 - -3.7
2,398,250 + Ga0059261_2294 0.76 +0.5
2,398,251 - Ga0059261_2294 0.76 -1.9
2,398,274 + Ga0059261_2294 0.78 -1.3
2,398,684 - Ga0059261_2295 0.40 -5.8
2,398,684 - Ga0059261_2295 0.40 -2.9
2,398,768 + Ga0059261_2295 0.55 -4.2
2,398,817 + Ga0059261_2295 0.64 -4.0
2,398,817 + Ga0059261_2295 0.64 -3.9
2,398,967 + -2.0
2,398,967 + -3.6
2,398,967 + -4.1
2,398,967 + -1.5
2,398,967 + -4.6
2,398,967 + -4.9
2,398,968 - -2.2
2,399,049 + -1.5
2,399,121 + -1.9
2,399,122 - +1.1
2,399,794 + Ga0059261_2297 0.14 -1.3
2,399,794 + Ga0059261_2297 0.14 +1.0
2,399,794 + Ga0059261_2297 0.14 -1.0
2,399,795 - Ga0059261_2297 0.14 -0.2
2,399,795 - Ga0059261_2297 0.14 +0.0
2,400,007 + Ga0059261_2297 0.58 -0.2
2,400,007 + Ga0059261_2297 0.58 -0.5
2,400,007 + Ga0059261_2297 0.58 -0.3
2,400,007 + Ga0059261_2297 0.58 +0.5
2,400,007 + Ga0059261_2297 0.58 -0.8
2,400,007 + Ga0059261_2297 0.58 +0.8
2,400,008 - Ga0059261_2297 0.58 -1.3
2,400,008 - Ga0059261_2297 0.58 +0.3
2,400,008 - Ga0059261_2297 0.58 -2.0
2,400,008 - Ga0059261_2297 0.58 -0.3
2,400,008 - Ga0059261_2297 0.58 +1.5
2,400,008 - Ga0059261_2297 0.58 -0.2

Or see this region's nucleotide sequence