Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1298

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1297 and Ga0059261_1298 are separated by 149 nucleotidesGa0059261_1298 and Ga0059261_1299 overlap by 4 nucleotides Ga0059261_1297: Ga0059261_1297 - TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein, at 1,362,209 to 1,364,383 _1297 Ga0059261_1298: Ga0059261_1298 - Glycosyltransferases involved in cell wall biogenesis, at 1,364,533 to 1,365,648 _1298 Ga0059261_1299: Ga0059261_1299 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 1,365,645 to 1,367,084 _1299 Position (kb) 1364 1365 1366Strain fitness (log2 ratio) -2 -1 0 1 2at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strandat 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.560 kb on + strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.561 kb on - strand, within Ga0059261_1297at 1363.572 kb on + strand, within Ga0059261_1297at 1363.572 kb on + strand, within Ga0059261_1297at 1363.573 kb on - strand, within Ga0059261_1297at 1363.612 kb on - strand, within Ga0059261_1297at 1363.729 kb on + strand, within Ga0059261_1297at 1363.729 kb on + strand, within Ga0059261_1297at 1363.729 kb on + strand, within Ga0059261_1297at 1363.729 kb on + strand, within Ga0059261_1297at 1363.729 kb on + strand, within Ga0059261_1297at 1363.730 kb on - strand, within Ga0059261_1297at 1363.730 kb on - strand, within Ga0059261_1297at 1363.730 kb on - strand, within Ga0059261_1297at 1363.731 kb on + strand, within Ga0059261_1297at 1363.731 kb on + strand, within Ga0059261_1297at 1363.732 kb on - strand, within Ga0059261_1297at 1363.732 kb on - strand, within Ga0059261_1297at 1363.732 kb on - strand, within Ga0059261_1297at 1363.732 kb on - strand, within Ga0059261_1297at 1363.912 kb on - strand, within Ga0059261_1297at 1363.971 kb on + strand, within Ga0059261_1297at 1363.971 kb on + strand, within Ga0059261_1297at 1363.972 kb on - strand, within Ga0059261_1297at 1363.972 kb on - strand, within Ga0059261_1297at 1363.972 kb on - strand, within Ga0059261_1297at 1363.972 kb on - strand, within Ga0059261_1297at 1364.379 kb on + strandat 1364.379 kb on + strandat 1364.380 kb on - strandat 1364.380 kb on - strandat 1364.380 kb on - strandat 1364.380 kb on - strandat 1364.436 kb on - strandat 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strandat 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1366.134 kb on + strand, within Ga0059261_1299at 1366.135 kb on - strand, within Ga0059261_1299at 1366.236 kb on + strand, within Ga0059261_1299at 1366.236 kb on + strand, within Ga0059261_1299at 1366.319 kb on + strand, within Ga0059261_1299at 1366.319 kb on + strandat 1366.320 kb on - strand, within Ga0059261_1299at 1366.320 kb on - strand, within Ga0059261_1299at 1366.322 kb on + strand, within Ga0059261_1299at 1366.322 kb on + strand, within Ga0059261_1299at 1366.322 kb on + strand, within Ga0059261_1299at 1366.323 kb on - strand, within Ga0059261_1299at 1366.323 kb on - strand, within Ga0059261_1299at 1366.355 kb on + strand, within Ga0059261_1299at 1366.356 kb on - strand, within Ga0059261_1299at 1366.398 kb on + strand, within Ga0059261_1299at 1366.398 kb on + strand, within Ga0059261_1299at 1366.398 kb on + strand, within Ga0059261_1299at 1366.399 kb on - strand, within Ga0059261_1299at 1366.399 kb on - strand, within Ga0059261_1299at 1366.470 kb on + strand, within Ga0059261_1299at 1366.520 kb on - strand, within Ga0059261_1299at 1366.520 kb on - strand, within Ga0059261_1299

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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1,363,560 + Ga0059261_1297 0.62 -0.3
1,363,560 + Ga0059261_1297 0.62 +0.2
1,363,560 + Ga0059261_1297 0.62 +0.2
1,363,560 + Ga0059261_1297 0.62 +0.2
1,363,560 + Ga0059261_1297 0.62 +0.5
1,363,560 + Ga0059261_1297 0.62 +0.4
1,363,560 + Ga0059261_1297 0.62 +0.4
1,363,560 + Ga0059261_1297 0.62 -0.3
1,363,560 + Ga0059261_1297 0.62 +0.4
1,363,560 + +0.1
1,363,560 + Ga0059261_1297 0.62 +2.1
1,363,560 + Ga0059261_1297 0.62 -1.0
1,363,560 + Ga0059261_1297 0.62 -0.2
1,363,561 - Ga0059261_1297 0.62 +1.6
1,363,561 - Ga0059261_1297 0.62 -0.9
1,363,561 - Ga0059261_1297 0.62 +0.1
1,363,561 - Ga0059261_1297 0.62 -0.4
1,363,561 - Ga0059261_1297 0.62 -0.3
1,363,561 - Ga0059261_1297 0.62 +2.1
1,363,561 - Ga0059261_1297 0.62 -0.3
1,363,561 - Ga0059261_1297 0.62 -0.6
1,363,561 - Ga0059261_1297 0.62 +0.8
1,363,561 - Ga0059261_1297 0.62 -0.5
1,363,572 + Ga0059261_1297 0.63 -0.5
1,363,572 + Ga0059261_1297 0.63 -1.1
1,363,573 - Ga0059261_1297 0.63 -0.1
1,363,612 - Ga0059261_1297 0.65 -0.6
1,363,729 + Ga0059261_1297 0.70 +0.4
1,363,729 + Ga0059261_1297 0.70 -2.5
1,363,729 + Ga0059261_1297 0.70 +0.0
1,363,729 + Ga0059261_1297 0.70 +1.2
1,363,729 + Ga0059261_1297 0.70 +1.3
1,363,730 - Ga0059261_1297 0.70 -1.3
1,363,730 - Ga0059261_1297 0.70 -0.3
1,363,730 - Ga0059261_1297 0.70 +0.6
1,363,731 + Ga0059261_1297 0.70 -0.3
1,363,731 + Ga0059261_1297 0.70 +0.4
1,363,732 - Ga0059261_1297 0.70 +0.9
1,363,732 - Ga0059261_1297 0.70 -0.6
1,363,732 - Ga0059261_1297 0.70 +0.6
1,363,732 - Ga0059261_1297 0.70 +0.1
1,363,912 - Ga0059261_1297 0.78 +0.1
1,363,971 + Ga0059261_1297 0.81 +1.0
1,363,971 + Ga0059261_1297 0.81 +0.3
1,363,972 - Ga0059261_1297 0.81 -0.5
1,363,972 - Ga0059261_1297 0.81 -0.7
1,363,972 - Ga0059261_1297 0.81 -0.9
1,363,972 - Ga0059261_1297 0.81 -0.2
1,364,379 + -0.2
1,364,379 + -0.3
1,364,380 - -0.0
1,364,380 - +0.8
1,364,380 - +0.7
1,364,380 - +0.3
1,364,436 - +0.2
1,365,873 + Ga0059261_1299 0.16 -1.5
1,365,873 + Ga0059261_1299 0.16 +0.7
1,365,873 + Ga0059261_1299 0.16 +0.2
1,365,873 + Ga0059261_1299 0.16 +0.2
1,365,873 + Ga0059261_1299 0.16 -0.6
1,365,873 + Ga0059261_1299 0.16 -0.6
1,365,873 + Ga0059261_1299 0.16 +0.2
1,365,874 - Ga0059261_1299 0.16 -0.6
1,365,874 - Ga0059261_1299 0.16 +2.4
1,365,874 - Ga0059261_1299 0.16 +0.8
1,365,874 - Ga0059261_1299 0.16 +0.5
1,365,874 - Ga0059261_1299 0.16 +0.3
1,365,874 - Ga0059261_1299 0.16 -0.8
1,365,874 - Ga0059261_1299 0.16 -0.1
1,365,875 + Ga0059261_1299 0.16 +0.3
1,365,875 + Ga0059261_1299 0.16 -0.6
1,365,875 + -1.6
1,365,875 + Ga0059261_1299 0.16 +0.2
1,365,875 + Ga0059261_1299 0.16 +0.8
1,365,875 + Ga0059261_1299 0.16 -0.3
1,365,875 + Ga0059261_1299 0.16 -0.1
1,365,876 - Ga0059261_1299 0.16 -0.1
1,365,876 - Ga0059261_1299 0.16 +0.5
1,365,876 - Ga0059261_1299 0.16 -0.7
1,365,876 - Ga0059261_1299 0.16 -1.3
1,365,876 - Ga0059261_1299 0.16 +0.2
1,365,876 - Ga0059261_1299 0.16 -0.3
1,365,876 - Ga0059261_1299 0.16 +0.6
1,365,876 - Ga0059261_1299 0.16 +1.0
1,365,876 - Ga0059261_1299 0.16 -0.4
1,365,876 - Ga0059261_1299 0.16 -1.1
1,366,134 + Ga0059261_1299 0.34 -0.2
1,366,135 - Ga0059261_1299 0.34 -0.2
1,366,236 + Ga0059261_1299 0.41 +0.4
1,366,236 + Ga0059261_1299 0.41 +0.7
1,366,319 + Ga0059261_1299 0.47 +0.6
1,366,319 + -1.5
1,366,320 - Ga0059261_1299 0.47 +0.3
1,366,320 - Ga0059261_1299 0.47 +0.7
1,366,322 + Ga0059261_1299 0.47 -0.2
1,366,322 + Ga0059261_1299 0.47 +0.3
1,366,322 + Ga0059261_1299 0.47 +0.4
1,366,323 - Ga0059261_1299 0.47 -0.4
1,366,323 - Ga0059261_1299 0.47 -0.2
1,366,355 + Ga0059261_1299 0.49 -0.7
1,366,356 - Ga0059261_1299 0.49 -0.9
1,366,398 + Ga0059261_1299 0.52 +0.3
1,366,398 + Ga0059261_1299 0.52 -0.3
1,366,398 + Ga0059261_1299 0.52 -0.9
1,366,399 - Ga0059261_1299 0.52 -0.0
1,366,399 - Ga0059261_1299 0.52 +0.0
1,366,470 + Ga0059261_1299 0.57 -0.1
1,366,520 - Ga0059261_1299 0.61 +0.7
1,366,520 - Ga0059261_1299 0.61 +0.2

Or see this region's nucleotide sequence