Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1283

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1281 and Ga0059261_1282 are separated by 101 nucleotidesGa0059261_1282 and Ga0059261_1283 are separated by 278 nucleotidesGa0059261_1283 and Ga0059261_1284 are separated by 49 nucleotides Ga0059261_1281: Ga0059261_1281 - histidinol dehydrogenase, at 1,341,360 to 1,342,646 _1281 Ga0059261_1282: Ga0059261_1282 - NusB antitermination factor, at 1,342,748 to 1,343,209 _1282 Ga0059261_1283: Ga0059261_1283 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 1,343,488 to 1,345,221 _1283 Ga0059261_1284: Ga0059261_1284 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,345,271 to 1,346,554 _1284 Position (kb) 1343 1344 1345 1346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1342.644 kb on + strandat 1342.644 kb on + strandat 1342.644 kb on + strandat 1342.645 kb on - strandat 1342.645 kb on - strandat 1342.669 kb on + strandat 1342.733 kb on + strandat 1343.207 kb on + strandat 1343.207 kb on + strandat 1343.207 kb on + strandat 1343.208 kb on - strandat 1343.418 kb on + strandat 1343.419 kb on - strandat 1343.419 kb on - strandat 1343.429 kb on + strandat 1343.429 kb on + strandat 1343.430 kb on - strandat 1343.451 kb on + strandat 1343.451 kb on + strandat 1343.451 kb on + strandat 1343.452 kb on - strandat 1343.490 kb on - strandat 1343.490 kb on - strandat 1343.490 kb on - strandat 1343.667 kb on - strand, within Ga0059261_1283at 1343.667 kb on - strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strandat 1343.750 kb on + strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strandat 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.770 kb on + strand, within Ga0059261_1283at 1343.771 kb on - strand, within Ga0059261_1283at 1343.771 kb on - strand, within Ga0059261_1283at 1343.771 kb on - strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strandat 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.880 kb on - strand, within Ga0059261_1283at 1343.880 kb on - strand, within Ga0059261_1283at 1343.880 kb on - strand, within Ga0059261_1283at 1343.880 kb on - strandat 1343.880 kb on - strand, within Ga0059261_1283at 1344.107 kb on + strand, within Ga0059261_1283at 1344.108 kb on - strand, within Ga0059261_1283at 1344.108 kb on - strand, within Ga0059261_1283at 1344.108 kb on - strand, within Ga0059261_1283at 1344.273 kb on + strandat 1344.344 kb on + strand, within Ga0059261_1283at 1344.354 kb on + strand, within Ga0059261_1283at 1344.354 kb on + strand, within Ga0059261_1283at 1344.354 kb on + strand, within Ga0059261_1283at 1344.354 kb on + strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.668 kb on - strand, within Ga0059261_1283at 1344.668 kb on - strand, within Ga0059261_1283at 1344.734 kb on + strand, within Ga0059261_1283at 1344.734 kb on + strand, within Ga0059261_1283at 1344.734 kb on + strand, within Ga0059261_1283at 1344.735 kb on - strand, within Ga0059261_1283at 1344.735 kb on - strand, within Ga0059261_1283at 1344.735 kb on - strand, within Ga0059261_1283at 1344.740 kb on + strand, within Ga0059261_1283at 1344.740 kb on + strand, within Ga0059261_1283at 1344.740 kb on + strand, within Ga0059261_1283at 1344.740 kb on + strand, within Ga0059261_1283at 1344.741 kb on - strand, within Ga0059261_1283at 1344.741 kb on - strand, within Ga0059261_1283at 1344.741 kb on - strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.968 kb on - strand, within Ga0059261_1283at 1344.968 kb on - strand, within Ga0059261_1283at 1344.968 kb on - strand, within Ga0059261_1283at 1344.968 kb on - strand, within Ga0059261_1283at 1345.016 kb on + strand, within Ga0059261_1283at 1345.017 kb on - strand, within Ga0059261_1283at 1345.272 kb on + strandat 1345.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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1,342,644 + -0.1
1,342,644 + +0.3
1,342,644 + -0.4
1,342,645 - +0.1
1,342,645 - +0.3
1,342,669 + +0.8
1,342,733 + -0.1
1,343,207 + +0.9
1,343,207 + -0.8
1,343,207 + +0.2
1,343,208 - -0.0
1,343,418 + +0.2
1,343,419 - -1.4
1,343,419 - +0.1
1,343,429 + +0.8
1,343,429 + -1.4
1,343,430 - +0.5
1,343,451 + -0.2
1,343,451 + +0.3
1,343,451 + -0.3
1,343,452 - -1.4
1,343,490 - -0.6
1,343,490 - -0.3
1,343,490 - +0.4
1,343,667 - Ga0059261_1283 0.10 +0.4
1,343,667 - Ga0059261_1283 0.10 +0.9
1,343,744 + Ga0059261_1283 0.15 -0.2
1,343,744 + Ga0059261_1283 0.15 -0.1
1,343,744 + Ga0059261_1283 0.15 -0.5
1,343,744 + Ga0059261_1283 0.15 -0.9
1,343,744 + Ga0059261_1283 0.15 -0.1
1,343,744 + Ga0059261_1283 0.15 -2.1
1,343,744 + Ga0059261_1283 0.15 +0.4
1,343,744 + Ga0059261_1283 0.15 -0.1
1,343,744 + Ga0059261_1283 0.15 -0.9
1,343,744 + Ga0059261_1283 0.15 -0.5
1,343,744 + Ga0059261_1283 0.15 -0.9
1,343,744 + Ga0059261_1283 0.15 +0.6
1,343,745 - Ga0059261_1283 0.15 -1.9
1,343,745 - Ga0059261_1283 0.15 -0.4
1,343,745 - Ga0059261_1283 0.15 -0.0
1,343,745 - Ga0059261_1283 0.15 +1.0
1,343,745 - Ga0059261_1283 0.15 -0.1
1,343,745 - Ga0059261_1283 0.15 -0.1
1,343,745 - Ga0059261_1283 0.15 -0.7
1,343,745 - Ga0059261_1283 0.15 +0.1
1,343,748 + Ga0059261_1283 0.15 +1.2
1,343,748 + Ga0059261_1283 0.15 -0.9
1,343,748 + Ga0059261_1283 0.15 -2.2
1,343,748 + Ga0059261_1283 0.15 +0.2
1,343,748 + Ga0059261_1283 0.15 +0.1
1,343,749 - Ga0059261_1283 0.15 -0.7
1,343,749 - Ga0059261_1283 0.15 +0.5
1,343,749 - Ga0059261_1283 0.15 +0.6
1,343,749 - Ga0059261_1283 0.15 -1.2
1,343,749 - Ga0059261_1283 0.15 -0.2
1,343,749 - Ga0059261_1283 0.15 +0.9
1,343,750 + Ga0059261_1283 0.15 -0.2
1,343,750 + Ga0059261_1283 0.15 -0.6
1,343,750 + Ga0059261_1283 0.15 +0.4
1,343,750 + Ga0059261_1283 0.15 +0.0
1,343,750 + Ga0059261_1283 0.15 +0.4
1,343,750 + Ga0059261_1283 0.15 -1.9
1,343,750 + Ga0059261_1283 0.15 -0.1
1,343,750 + Ga0059261_1283 0.15 +0.7
1,343,750 + Ga0059261_1283 0.15 -0.2
1,343,750 + Ga0059261_1283 0.15 -0.6
1,343,750 + +0.9
1,343,750 + Ga0059261_1283 0.15 +0.5
1,343,751 - Ga0059261_1283 0.15 +1.2
1,343,751 - Ga0059261_1283 0.15 -0.1
1,343,751 - Ga0059261_1283 0.15 -0.7
1,343,751 - Ga0059261_1283 0.15 +0.2
1,343,751 - +1.9
1,343,751 - Ga0059261_1283 0.15 +0.3
1,343,751 - Ga0059261_1283 0.15 -2.1
1,343,770 + Ga0059261_1283 0.16 +0.0
1,343,771 - Ga0059261_1283 0.16 +0.0
1,343,771 - Ga0059261_1283 0.16 -3.0
1,343,771 - Ga0059261_1283 0.16 +0.9
1,343,879 + Ga0059261_1283 0.23 +0.8
1,343,879 + -0.1
1,343,879 + Ga0059261_1283 0.23 -0.2
1,343,879 + Ga0059261_1283 0.23 +1.1
1,343,879 + Ga0059261_1283 0.23 +0.7
1,343,879 + Ga0059261_1283 0.23 -0.4
1,343,879 + Ga0059261_1283 0.23 +0.1
1,343,880 - Ga0059261_1283 0.23 -0.7
1,343,880 - Ga0059261_1283 0.23 -1.1
1,343,880 - Ga0059261_1283 0.23 +0.4
1,343,880 - +0.9
1,343,880 - Ga0059261_1283 0.23 -0.9
1,344,107 + Ga0059261_1283 0.36 +0.8
1,344,108 - Ga0059261_1283 0.36 -1.8
1,344,108 - Ga0059261_1283 0.36 -0.7
1,344,108 - Ga0059261_1283 0.36 +0.3
1,344,273 + -0.0
1,344,344 + Ga0059261_1283 0.49 +0.5
1,344,354 + Ga0059261_1283 0.50 -0.3
1,344,354 + Ga0059261_1283 0.50 +0.2
1,344,354 + Ga0059261_1283 0.50 -0.6
1,344,354 + Ga0059261_1283 0.50 +0.7
1,344,355 - Ga0059261_1283 0.50 -0.3
1,344,355 - Ga0059261_1283 0.50 +0.4
1,344,355 - Ga0059261_1283 0.50 -0.8
1,344,355 - Ga0059261_1283 0.50 -0.7
1,344,355 - Ga0059261_1283 0.50 -0.2
1,344,355 - Ga0059261_1283 0.50 -0.2
1,344,355 - Ga0059261_1283 0.50 +0.6
1,344,356 + Ga0059261_1283 0.50 -0.8
1,344,356 + Ga0059261_1283 0.50 +0.1
1,344,356 + Ga0059261_1283 0.50 +0.2
1,344,356 + Ga0059261_1283 0.50 +0.8
1,344,356 + Ga0059261_1283 0.50 -0.8
1,344,356 + Ga0059261_1283 0.50 -0.9
1,344,356 + Ga0059261_1283 0.50 +0.3
1,344,357 - Ga0059261_1283 0.50 -1.0
1,344,357 - Ga0059261_1283 0.50 -0.1
1,344,357 - Ga0059261_1283 0.50 -0.2
1,344,357 - Ga0059261_1283 0.50 -0.0
1,344,357 - Ga0059261_1283 0.50 +0.6
1,344,357 - Ga0059261_1283 0.50 +0.1
1,344,357 - Ga0059261_1283 0.50 +0.2
1,344,357 - Ga0059261_1283 0.50 +0.1
1,344,602 + Ga0059261_1283 0.64 -0.5
1,344,602 + Ga0059261_1283 0.64 +0.4
1,344,602 + Ga0059261_1283 0.64 -1.2
1,344,602 + Ga0059261_1283 0.64 +0.8
1,344,602 + Ga0059261_1283 0.64 -1.5
1,344,602 + Ga0059261_1283 0.64 -1.0
1,344,602 + Ga0059261_1283 0.64 +0.3
1,344,603 - Ga0059261_1283 0.64 -0.3
1,344,603 - Ga0059261_1283 0.64 +0.6
1,344,603 - Ga0059261_1283 0.64 -0.5
1,344,603 - Ga0059261_1283 0.64 -1.2
1,344,603 - Ga0059261_1283 0.64 +1.5
1,344,603 - Ga0059261_1283 0.64 +0.6
1,344,603 - Ga0059261_1283 0.64 +0.4
1,344,603 - Ga0059261_1283 0.64 -0.5
1,344,603 - Ga0059261_1283 0.64 -0.9
1,344,603 - Ga0059261_1283 0.64 -0.1
1,344,667 + Ga0059261_1283 0.68 +1.4
1,344,667 + Ga0059261_1283 0.68 +0.3
1,344,667 + Ga0059261_1283 0.68 -1.4
1,344,667 + Ga0059261_1283 0.68 +0.1
1,344,667 + Ga0059261_1283 0.68 +0.2
1,344,668 - Ga0059261_1283 0.68 -0.1
1,344,668 - Ga0059261_1283 0.68 +1.0
1,344,734 + Ga0059261_1283 0.72 +0.8
1,344,734 + Ga0059261_1283 0.72 +1.0
1,344,734 + Ga0059261_1283 0.72 +0.1
1,344,735 - Ga0059261_1283 0.72 +0.1
1,344,735 - Ga0059261_1283 0.72 +0.5
1,344,735 - Ga0059261_1283 0.72 +0.1
1,344,740 + Ga0059261_1283 0.72 +1.1
1,344,740 + Ga0059261_1283 0.72 +0.1
1,344,740 + Ga0059261_1283 0.72 -0.6
1,344,740 + Ga0059261_1283 0.72 -0.2
1,344,741 - Ga0059261_1283 0.72 +0.3
1,344,741 - Ga0059261_1283 0.72 +1.0
1,344,741 - Ga0059261_1283 0.72 -2.0
1,344,967 + Ga0059261_1283 0.85 -0.3
1,344,967 + Ga0059261_1283 0.85 -0.9
1,344,967 + Ga0059261_1283 0.85 +0.7
1,344,967 + Ga0059261_1283 0.85 -0.5
1,344,967 + Ga0059261_1283 0.85 -0.3
1,344,967 + Ga0059261_1283 0.85 -0.8
1,344,967 + Ga0059261_1283 0.85 +0.8
1,344,967 + Ga0059261_1283 0.85 -0.1
1,344,968 - Ga0059261_1283 0.85 -0.3
1,344,968 - Ga0059261_1283 0.85 +1.0
1,344,968 - Ga0059261_1283 0.85 -0.5
1,344,968 - Ga0059261_1283 0.85 -1.0
1,345,016 + Ga0059261_1283 0.88 +0.3
1,345,017 - Ga0059261_1283 0.88 +0.5
1,345,272 + +0.7
1,345,273 - +0.2

Or see this region's nucleotide sequence