Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0879 and Ga0059261_0880 are separated by 47 nucleotides Ga0059261_0880 and Ga0059261_0881 are separated by 32 nucleotides Ga0059261_0881 and Ga0059261_0882 are separated by 160 nucleotides
Ga0059261_0879: Ga0059261_0879 - ribosomal RNA small subunit methyltransferase A, at 920,433 to 921,251
_0879
Ga0059261_0880: Ga0059261_0880 - Tetratricopeptide repeat, at 921,299 to 921,805
_0880
Ga0059261_0881: Ga0059261_0881 - tRNA and rRNA cytosine-C5-methylases, at 921,838 to 923,022
_0881
Ga0059261_0882: Ga0059261_0882 - Predicted membrane protein, at 923,183 to 924,352
_0882
Position (kb) 921
922
923
924 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 920.922 kb on + strand at 920.923 kb on - strand, within Ga0059261_0879 at 921.032 kb on + strand, within Ga0059261_0879 at 921.032 kb on + strand, within Ga0059261_0879 at 921.032 kb on + strand, within Ga0059261_0879 at 921.032 kb on + strand, within Ga0059261_0879 at 921.033 kb on - strand, within Ga0059261_0879 at 921.033 kb on - strand, within Ga0059261_0879 at 921.033 kb on - strand, within Ga0059261_0879 at 921.033 kb on - strand, within Ga0059261_0879 at 921.205 kb on + strand at 921.249 kb on + strand at 921.249 kb on + strand at 921.250 kb on - strand at 921.250 kb on - strand at 921.250 kb on - strand at 921.269 kb on - strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.301 kb on - strand at 921.301 kb on - strand at 921.301 kb on - strand at 921.301 kb on - strand at 921.534 kb on + strand, within Ga0059261_0880 at 921.534 kb on + strand, within Ga0059261_0880 at 921.534 kb on + strand, within Ga0059261_0880 at 921.535 kb on - strand, within Ga0059261_0880 at 921.535 kb on - strand, within Ga0059261_0880 at 921.535 kb on - strand, within Ga0059261_0880 at 921.535 kb on - strand, within Ga0059261_0880 at 921.593 kb on - strand, within Ga0059261_0880 at 921.593 kb on - strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.594 kb on + strand, within Ga0059261_0880 at 921.595 kb on - strand, within Ga0059261_0880 at 921.595 kb on - strand at 921.595 kb on - strand, within Ga0059261_0880 at 921.595 kb on - strand, within Ga0059261_0880 at 921.799 kb on + strand at 921.799 kb on + strand at 921.799 kb on + strand at 921.800 kb on - strand at 921.800 kb on - strand at 921.800 kb on - strand at 921.800 kb on - strand at 921.821 kb on + strand at 921.821 kb on + strand at 921.822 kb on - strand at 921.822 kb on - strand at 921.822 kb on - strand at 921.836 kb on + strand at 921.836 kb on + strand at 921.836 kb on + strand at 921.836 kb on + strand at 921.837 kb on - strand at 921.837 kb on - strand at 921.837 kb on - strand at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.018 kb on + strand, within Ga0059261_0881 at 922.019 kb on - strand, within Ga0059261_0881 at 922.019 kb on - strand, within Ga0059261_0881 at 922.019 kb on - strand, within Ga0059261_0881 at 922.019 kb on - strand, within Ga0059261_0881 at 922.019 kb on - strand, within Ga0059261_0881 at 922.019 kb on - strand, within Ga0059261_0881 at 922.019 kb on - strand, within Ga0059261_0881 at 922.019 kb on - strand, within Ga0059261_0881 at 922.484 kb on + strand, within Ga0059261_0881 at 922.484 kb on + strand, within Ga0059261_0881 at 922.485 kb on - strand, within Ga0059261_0881 at 922.485 kb on - strand, within Ga0059261_0881 at 922.485 kb on - strand, within Ga0059261_0881 at 922.752 kb on - strand at 922.752 kb on - strand, within Ga0059261_0881 at 922.902 kb on - strand at 922.902 kb on - strand, within Ga0059261_0881 at 923.004 kb on + strand at 923.142 kb on + strand at 923.143 kb on - strand at 923.357 kb on + strand, within Ga0059261_0882 at 923.357 kb on + strand, within Ga0059261_0882 at 923.420 kb on + strand, within Ga0059261_0882 at 923.420 kb on + strand, within Ga0059261_0882 at 923.420 kb on + strand, within Ga0059261_0882 at 923.421 kb on - strand, within Ga0059261_0882 at 923.421 kb on - strand, within Ga0059261_0882 at 923.421 kb on - strand at 923.421 kb on - strand, within Ga0059261_0882 at 923.421 kb on - strand, within Ga0059261_0882 at 923.421 kb on - strand, within Ga0059261_0882 at 923.461 kb on + strand, within Ga0059261_0882 at 923.461 kb on + strand, within Ga0059261_0882 at 923.461 kb on + strand, within Ga0059261_0882 at 923.462 kb on - strand, within Ga0059261_0882 at 923.462 kb on - strand, within Ga0059261_0882 at 923.462 kb on - strand, within Ga0059261_0882 at 923.544 kb on - strand, within Ga0059261_0882 at 923.544 kb on - strand, within Ga0059261_0882 at 923.544 kb on - strand, within Ga0059261_0882 at 923.547 kb on + strand, within Ga0059261_0882 at 923.574 kb on + strand, within Ga0059261_0882 at 923.627 kb on + strand, within Ga0059261_0882 at 923.628 kb on - strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.658 kb on - strand, within Ga0059261_0882 at 923.672 kb on + strand, within Ga0059261_0882 at 923.673 kb on - strand, within Ga0059261_0882 at 923.673 kb on - strand, within Ga0059261_0882 at 923.673 kb on - strand, within Ga0059261_0882 at 923.731 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.908 kb on + strand, within Ga0059261_0882 at 923.909 kb on - strand, within Ga0059261_0882 at 923.954 kb on + strand, within Ga0059261_0882 at 923.955 kb on - strand, within Ga0059261_0882 at 923.955 kb on - strand, within Ga0059261_0882 at 924.015 kb on - strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins remove 920,922 + +1.8 920,923 - Ga0059261_0879 0.60 +1.6 921,032 + Ga0059261_0879 0.73 +0.9 921,032 + Ga0059261_0879 0.73 +1.1 921,032 + Ga0059261_0879 0.73 +1.3 921,032 + Ga0059261_0879 0.73 +2.8 921,033 - Ga0059261_0879 0.73 -0.2 921,033 - Ga0059261_0879 0.73 +0.1 921,033 - Ga0059261_0879 0.73 +0.6 921,033 - Ga0059261_0879 0.73 +0.9 921,205 + +0.3 921,249 + +0.6 921,249 + +0.7 921,250 - -0.3 921,250 - -0.3 921,250 - +0.2 921,269 - -0.3 921,300 + +0.3 921,300 + -0.1 921,300 + -0.1 921,300 + -0.7 921,300 + +0.6 921,300 + +0.3 921,300 + +0.1 921,300 + -0.7 921,300 + -0.6 921,300 + -0.0 921,301 - -1.2 921,301 - -0.8 921,301 - -1.9 921,301 - +0.9 921,534 + Ga0059261_0880 0.46 -2.0 921,534 + Ga0059261_0880 0.46 -1.7 921,534 + Ga0059261_0880 0.46 -3.0 921,535 - Ga0059261_0880 0.47 -3.0 921,535 - Ga0059261_0880 0.47 -3.8 921,535 - Ga0059261_0880 0.47 -2.9 921,535 - Ga0059261_0880 0.47 -1.0 921,593 - Ga0059261_0880 0.58 -2.5 921,593 - Ga0059261_0880 0.58 -0.5 921,594 + Ga0059261_0880 0.58 -2.2 921,594 + Ga0059261_0880 0.58 -1.8 921,594 + Ga0059261_0880 0.58 -1.4 921,594 + Ga0059261_0880 0.58 -2.8 921,594 + Ga0059261_0880 0.58 -1.5 921,594 + Ga0059261_0880 0.58 -1.5 921,594 + Ga0059261_0880 0.58 -0.3 921,594 + Ga0059261_0880 0.58 -1.5 921,594 + Ga0059261_0880 0.58 -1.9 921,595 - Ga0059261_0880 0.58 -1.5 921,595 - -2.7 921,595 - Ga0059261_0880 0.58 -2.4 921,595 - Ga0059261_0880 0.58 -1.5 921,799 + -2.1 921,799 + -1.5 921,799 + -1.6 921,800 - -1.7 921,800 - -3.4 921,800 - -0.8 921,800 - -1.0 921,821 + +0.1 921,821 + -2.6 921,822 - -0.3 921,822 - -1.4 921,822 - -0.9 921,836 + -0.5 921,836 + -3.3 921,836 + -1.1 921,836 + -0.6 921,837 - -1.0 921,837 - +0.1 921,837 - -1.4 922,018 + Ga0059261_0881 0.15 -1.1 922,018 + Ga0059261_0881 0.15 +0.4 922,018 + Ga0059261_0881 0.15 +0.2 922,018 + Ga0059261_0881 0.15 +0.2 922,018 + Ga0059261_0881 0.15 +0.2 922,018 + Ga0059261_0881 0.15 -0.6 922,018 + Ga0059261_0881 0.15 -0.5 922,018 + Ga0059261_0881 0.15 +0.9 922,018 + Ga0059261_0881 0.15 -0.3 922,018 + Ga0059261_0881 0.15 -0.8 922,018 + Ga0059261_0881 0.15 -0.2 922,018 + Ga0059261_0881 0.15 +0.7 922,019 - Ga0059261_0881 0.15 +0.1 922,019 - Ga0059261_0881 0.15 +0.1 922,019 - Ga0059261_0881 0.15 -1.0 922,019 - Ga0059261_0881 0.15 -0.0 922,019 - Ga0059261_0881 0.15 -0.2 922,019 - Ga0059261_0881 0.15 -0.1 922,019 - Ga0059261_0881 0.15 -0.6 922,019 - Ga0059261_0881 0.15 +0.8 922,484 + Ga0059261_0881 0.55 +1.1 922,484 + Ga0059261_0881 0.55 +0.2 922,485 - Ga0059261_0881 0.55 +0.1 922,485 - Ga0059261_0881 0.55 +1.3 922,485 - Ga0059261_0881 0.55 -0.5 922,752 - -1.9 922,752 - Ga0059261_0881 0.77 -0.7 922,902 - -0.2 922,902 - Ga0059261_0881 0.90 -0.6 923,004 + -0.1 923,142 + -0.4 923,143 - +0.5 923,357 + Ga0059261_0882 0.15 +0.0 923,357 + Ga0059261_0882 0.15 +0.9 923,420 + Ga0059261_0882 0.20 -0.2 923,420 + Ga0059261_0882 0.20 +0.3 923,420 + Ga0059261_0882 0.20 -0.1 923,421 - Ga0059261_0882 0.20 +0.5 923,421 - Ga0059261_0882 0.20 +1.0 923,421 - +1.9 923,421 - Ga0059261_0882 0.20 +0.5 923,421 - Ga0059261_0882 0.20 -0.6 923,421 - Ga0059261_0882 0.20 -1.2 923,461 + Ga0059261_0882 0.24 -0.6 923,461 + Ga0059261_0882 0.24 -1.0 923,461 + Ga0059261_0882 0.24 +0.0 923,462 - Ga0059261_0882 0.24 +0.5 923,462 - Ga0059261_0882 0.24 -0.2 923,462 - Ga0059261_0882 0.24 -0.4 923,544 - Ga0059261_0882 0.31 -0.2 923,544 - Ga0059261_0882 0.31 -3.5 923,544 - Ga0059261_0882 0.31 -0.2 923,547 + Ga0059261_0882 0.31 +0.1 923,574 + Ga0059261_0882 0.33 +0.4 923,627 + Ga0059261_0882 0.38 -0.5 923,628 - Ga0059261_0882 0.38 +1.9 923,657 + Ga0059261_0882 0.41 -0.2 923,657 + Ga0059261_0882 0.41 +0.3 923,657 + Ga0059261_0882 0.41 -0.9 923,657 + Ga0059261_0882 0.41 +0.3 923,657 + Ga0059261_0882 0.41 -0.8 923,657 + Ga0059261_0882 0.41 -0.5 923,658 - Ga0059261_0882 0.41 -1.1 923,672 + Ga0059261_0882 0.42 +0.1 923,673 - Ga0059261_0882 0.42 -0.1 923,673 - Ga0059261_0882 0.42 -0.1 923,673 - Ga0059261_0882 0.42 -0.1 923,731 + Ga0059261_0882 0.47 +0.9 923,794 + Ga0059261_0882 0.52 +0.4 923,794 + Ga0059261_0882 0.52 +0.2 923,794 + Ga0059261_0882 0.52 -0.4 923,794 + Ga0059261_0882 0.52 -0.1 923,794 + Ga0059261_0882 0.52 +0.8 923,795 - Ga0059261_0882 0.52 +0.1 923,795 - Ga0059261_0882 0.52 +0.3 923,795 - Ga0059261_0882 0.52 +0.1 923,795 - Ga0059261_0882 0.52 -2.1 923,795 - Ga0059261_0882 0.52 -0.1 923,795 - Ga0059261_0882 0.52 -0.2 923,795 - Ga0059261_0882 0.52 -0.1 923,795 - Ga0059261_0882 0.52 -0.2 923,795 - Ga0059261_0882 0.52 -0.1 923,908 + Ga0059261_0882 0.62 -0.4 923,909 - Ga0059261_0882 0.62 -1.1 923,954 + Ga0059261_0882 0.66 -0.4 923,955 - Ga0059261_0882 0.66 +1.0 923,955 - Ga0059261_0882 0.66 +1.6 924,015 - Ga0059261_0882 0.71 +2.2 924,022 + Ga0059261_0882 0.72 -0.1 924,022 + Ga0059261_0882 0.72 -1.2 924,022 + Ga0059261_0882 0.72 -0.9 924,022 + Ga0059261_0882 0.72 +0.5 924,022 + Ga0059261_0882 0.72 +0.5 924,022 + Ga0059261_0882 0.72 +0.6 924,022 + Ga0059261_0882 0.72 -0.4
Or see this region's nucleotide sequence