Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16150 and BWI76_RS16155 overlap by 4 nucleotides BWI76_RS16155 and BWI76_RS16160 are separated by 101 nucleotides BWI76_RS16160 and BWI76_RS16165 are separated by 166 nucleotides
BWI76_RS16150: BWI76_RS16150 - IclR family transcriptional regulator, at 3,350,484 to 3,351,290
_RS16150
BWI76_RS16155: BWI76_RS16155 - hypothetical protein, at 3,351,287 to 3,351,850
_RS16155
BWI76_RS16160: BWI76_RS16160 - LysR family transcriptional regulator, at 3,351,952 to 3,352,860
_RS16160
BWI76_RS16165: BWI76_RS16165 - peptidase M20, at 3,353,027 to 3,354,337
_RS16165
Position (kb)
3351
3352
3353 Strain fitness (log2 ratio)
-1
0
1 at 3351.301 kb on - strand at 3351.925 kb on + strand at 3351.929 kb on - strand at 3351.978 kb on - strand at 3352.211 kb on + strand, within BWI76_RS16160 at 3353.122 kb on + strand at 3353.211 kb on + strand, within BWI76_RS16165 at 3353.271 kb on - strand, within BWI76_RS16165 at 3353.544 kb on - strand, within BWI76_RS16165 at 3353.690 kb on + strand, within BWI76_RS16165 at 3353.833 kb on - strand, within BWI76_RS16165
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 3,351,301 - +0.0 3,351,925 + +0.7 3,351,929 - -0.3 3,351,978 - -0.2 3,352,211 + BWI76_RS16160 0.28 +0.4 3,353,122 + +1.5 3,353,211 + BWI76_RS16165 0.14 -0.4 3,353,271 - BWI76_RS16165 0.19 +0.6 3,353,544 - BWI76_RS16165 0.39 +0.4 3,353,690 + BWI76_RS16165 0.51 +0.0 3,353,833 - BWI76_RS16165 0.61 +0.1
Or see this region's nucleotide sequence