Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07560 and BWI76_RS07565 are separated by 308 nucleotides BWI76_RS07565 and BWI76_RS07570 are separated by 24 nucleotides
BWI76_RS07560: BWI76_RS07560 - aminotransferase regulator domain-containing protein, at 1,600,675 to 1,602,009
_RS07560
BWI76_RS07565: BWI76_RS07565 - LysE type translocator family protein, at 1,602,318 to 1,602,959
_RS07565
BWI76_RS07570: BWI76_RS07570 - GntR family transcriptional regulator with, at 1,602,984 to 1,604,450
_RS07570
Position (kb)
1602
1603 Strain fitness (log2 ratio)
-1
0
1
2 at 1601.352 kb on - strand, within BWI76_RS07560 at 1601.471 kb on - strand, within BWI76_RS07560 at 1601.634 kb on + strand, within BWI76_RS07560 at 1601.634 kb on + strand, within BWI76_RS07560 at 1601.689 kb on + strand, within BWI76_RS07560 at 1601.805 kb on + strand, within BWI76_RS07560 at 1601.813 kb on - strand, within BWI76_RS07560 at 1601.941 kb on + strand at 1601.970 kb on - strand at 1602.055 kb on + strand at 1602.233 kb on + strand at 1602.290 kb on + strand at 1602.290 kb on + strand at 1602.298 kb on - strand at 1602.298 kb on - strand at 1602.308 kb on - strand at 1602.334 kb on + strand at 1602.395 kb on + strand, within BWI76_RS07565 at 1602.419 kb on + strand, within BWI76_RS07565 at 1602.445 kb on - strand, within BWI76_RS07565 at 1602.457 kb on + strand, within BWI76_RS07565 at 1602.463 kb on + strand, within BWI76_RS07565 at 1602.773 kb on + strand, within BWI76_RS07565 at 1602.773 kb on + strand, within BWI76_RS07565 at 1602.781 kb on - strand, within BWI76_RS07565 at 1602.802 kb on - strand, within BWI76_RS07565 at 1602.821 kb on - strand, within BWI76_RS07565 at 1602.835 kb on + strand, within BWI76_RS07565 at 1603.016 kb on + strand at 1603.158 kb on - strand, within BWI76_RS07570 at 1603.162 kb on + strand, within BWI76_RS07570 at 1603.275 kb on - strand, within BWI76_RS07570 at 1603.376 kb on + strand, within BWI76_RS07570 at 1603.400 kb on - strand, within BWI76_RS07570 at 1603.631 kb on - strand, within BWI76_RS07570
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 1,601,352 - BWI76_RS07560 0.51 -1.1 1,601,471 - BWI76_RS07560 0.60 +0.7 1,601,634 + BWI76_RS07560 0.72 +0.0 1,601,634 + BWI76_RS07560 0.72 -0.1 1,601,689 + BWI76_RS07560 0.76 -0.5 1,601,805 + BWI76_RS07560 0.85 +0.3 1,601,813 - BWI76_RS07560 0.85 +1.0 1,601,941 + +0.0 1,601,970 - +0.2 1,602,055 + +0.9 1,602,233 + +0.0 1,602,290 + +1.6 1,602,290 + -0.7 1,602,298 - -0.1 1,602,298 - -0.7 1,602,308 - +1.5 1,602,334 + +0.0 1,602,395 + BWI76_RS07565 0.12 +1.9 1,602,419 + BWI76_RS07565 0.16 +0.0 1,602,445 - BWI76_RS07565 0.20 +2.3 1,602,457 + BWI76_RS07565 0.22 +1.0 1,602,463 + BWI76_RS07565 0.23 +1.6 1,602,773 + BWI76_RS07565 0.71 -0.0 1,602,773 + BWI76_RS07565 0.71 +0.1 1,602,781 - BWI76_RS07565 0.72 +1.0 1,602,802 - BWI76_RS07565 0.75 +0.0 1,602,821 - BWI76_RS07565 0.78 -0.2 1,602,835 + BWI76_RS07565 0.81 -0.2 1,603,016 + +0.7 1,603,158 - BWI76_RS07570 0.12 +0.4 1,603,162 + BWI76_RS07570 0.12 -0.1 1,603,275 - BWI76_RS07570 0.20 +0.3 1,603,376 + BWI76_RS07570 0.27 -0.5 1,603,400 - BWI76_RS07570 0.28 +0.1 1,603,631 - BWI76_RS07570 0.44 +0.0
Or see this region's nucleotide sequence