Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35710

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35705 and BPHYT_RS35710 are separated by 65 nucleotidesBPHYT_RS35710 and BPHYT_RS35715 are separated by 310 nucleotidesBPHYT_RS35715 and BPHYT_RS35720 are separated by 87 nucleotides BPHYT_RS35705: BPHYT_RS35705 - FAD-dependent oxidoreductase, at 3,601,865 to 3,603,574 _RS35705 BPHYT_RS35710: BPHYT_RS35710 - hypothetical protein, at 3,603,640 to 3,603,876 _RS35710 BPHYT_RS35715: BPHYT_RS35715 - hypothetical protein, at 3,604,187 to 3,604,663 _RS35715 BPHYT_RS35720: BPHYT_RS35720 - phosphopantetheinyl transferase, at 3,604,751 to 3,605,446 _RS35720 Position (kb) 3603 3604Strain fitness (log2 ratio) -3 -2 -1 0 1at 3603.977 kb on + strandat 3604.027 kb on - strandat 3604.053 kb on + strandat 3604.205 kb on - strandat 3604.718 kb on + strandat 3604.755 kb on - strandat 3604.857 kb on + strand, within BPHYT_RS35720at 3604.858 kb on - strand, within BPHYT_RS35720at 3604.858 kb on - strand, within BPHYT_RS35720at 3604.858 kb on - strand, within BPHYT_RS35720at 3604.858 kb on - strand, within BPHYT_RS35720

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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3,603,977 + +0.2
3,604,027 - -0.5
3,604,053 + +0.7
3,604,205 - -1.8
3,604,718 + +1.0
3,604,755 - +1.1
3,604,857 + BPHYT_RS35720 0.15 -3.1
3,604,858 - BPHYT_RS35720 0.15 -1.7
3,604,858 - BPHYT_RS35720 0.15 -0.3
3,604,858 - BPHYT_RS35720 0.15 -1.1
3,604,858 - BPHYT_RS35720 0.15 -0.5

Or see this region's nucleotide sequence