Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35685

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35680 and BPHYT_RS35685 are separated by 173 nucleotidesBPHYT_RS35685 and BPHYT_RS35690 are separated by 12 nucleotidesBPHYT_RS35690 and BPHYT_RS35695 overlap by 4 nucleotides BPHYT_RS35680: BPHYT_RS35680 - sugar ABC transporter ATP-binding protein, at 3,596,710 to 3,597,792 _RS35680 BPHYT_RS35685: BPHYT_RS35685 - RpiR family transcriptional regulator, at 3,597,966 to 3,598,829 _RS35685 BPHYT_RS35690: BPHYT_RS35690 - IclR family transcriptional regulator, at 3,598,842 to 3,599,729 _RS35690 BPHYT_RS35695: BPHYT_RS35695 - IclR family transcriptional regulator, at 3,599,726 to 3,600,613 _RS35695 Position (kb) 3597 3598 3599Strain fitness (log2 ratio) -2 -1 0 1at 3596.968 kb on + strand, within BPHYT_RS35680at 3597.751 kb on - strandat 3597.751 kb on - strandat 3597.864 kb on + strandat 3597.865 kb on - strandat 3598.844 kb on - strandat 3599.243 kb on - strand, within BPHYT_RS35690

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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3,596,968 + BPHYT_RS35680 0.24 +1.0
3,597,751 - -0.9
3,597,751 - -1.9
3,597,864 + -1.0
3,597,865 - +0.2
3,598,844 - +0.2
3,599,243 - BPHYT_RS35690 0.45 -2.1

Or see this region's nucleotide sequence