Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33125

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33120 and BPHYT_RS33125 are separated by 223 nucleotidesBPHYT_RS33125 and BPHYT_RS33130 are separated by 388 nucleotides BPHYT_RS33120: BPHYT_RS33120 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,007,473 to 3,008,681 _RS33120 BPHYT_RS33125: BPHYT_RS33125 - hypothetical protein, at 3,008,905 to 3,009,627 _RS33125 BPHYT_RS33130: BPHYT_RS33130 - transcriptional regulator, at 3,010,016 to 3,011,428 _RS33130 Position (kb) 3008 3009 3010Strain fitness (log2 ratio) -3 -2 -1 0 1at 3008.305 kb on + strand, within BPHYT_RS33120at 3008.896 kb on + strandat 3008.896 kb on + strandat 3008.911 kb on - strandat 3008.943 kb on - strandat 3009.107 kb on - strand, within BPHYT_RS33125at 3009.115 kb on + strand, within BPHYT_RS33125at 3009.392 kb on - strand, within BPHYT_RS33125at 3009.900 kb on + strandat 3010.020 kb on + strandat 3010.123 kb on - strandat 3010.501 kb on - strand, within BPHYT_RS33130

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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3,008,305 + BPHYT_RS33120 0.69 -0.4
3,008,896 + -2.7
3,008,896 + +0.3
3,008,911 - +0.2
3,008,943 - +0.7
3,009,107 - BPHYT_RS33125 0.28 -1.4
3,009,115 + BPHYT_RS33125 0.29 +1.0
3,009,392 - BPHYT_RS33125 0.67 -3.1
3,009,900 + -2.7
3,010,020 + +0.8
3,010,123 - +0.0
3,010,501 - BPHYT_RS33130 0.34 -0.8

Or see this region's nucleotide sequence